Chroicocephalus ridibundus (black-headed gull): 134513925
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Entry
134513925 CDS
T10910
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04510
Focal adhesion
crid04512
ECM-receptor interaction
crid04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134513925 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134513925 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134513925 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
crid00535
]
134513925 (COL9A1)
Proteoglycans [BR:
crid00535
]
Extracellular matrix (ECM) proteoglycans
Others
134513925 (COL9A1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
134513925
NCBI-ProteinID:
XP_063187193
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Position
3:96629927..96704712
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AA seq
921 aa
AA seq
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MKSNWKISGFFYVCSFLWSFISATIQQQSRLPVILGASRRTDLCPTIRIGQDDLPGFDLI
SQFQIEKAASQGIIQRVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGPMKSVEFSYKGADGSPQTASFLHLPFLFDSQW
HKLMISVEANSVTLFIDCIKIESLNIKPKGKISVDGFAVLGKLKNNPEISVPFEIQWMVI
HCDPLRPQREGCGELPARVSISQTVIERGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGP
PGPPGPDGDAGKPGSPGLPGEPGADGFTGPDGSRGATGPKGQKGEPGLPGAHGLPGKGLL
GPPGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPGPPGPRGTIGLQDGDPLCPNACPPGRP
GHAGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPIGEVGAQGPPGILGIRGITGIMGPK
GTKGARGLDGDPGPQGLPGAPGDQGQRGPLGEEGPKGERGPQGTRGINGLPGPKGESGLP
GVDGREGIPGMPGAKGEPGKPGAPGDAGLQGLPGLPGSPGVKGIPGTKGNRGPPGVPGLM
GNSGKPGERGPEGEAGPTGPRGPPGSRGEPGPAGPPGLPGKLGPQGDIGLPGLPGPPGLP
GGKGDRGSVGEPGPKGEQGAPGAEGDGGEKGDLGDMGLPGAKGAVGNPGDSGSRGPEGSR
GLPGMEGPRGSPGPRGLQGEQGAPGLPGSQGPAGKEPTDQHIKQVCMRVMQEQLAQLAAS
LKRPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGER
GERGFPGRGLKGYPGPRGLPGEPGKPSYGREGRDGDRGLPGVAGQPGVPGPPGPPGPPGY
CEPSSCRMQAGQRVGKNMKGP
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaactggaaaatttcaggcttcttttacgtgtgtagttttctgtggtctttc
atctcagccaccatccagcaacaatcaagactaccagtcattctgggtgccagtcgtaga
actgatctctgcccaacaataaggattggccaagatgacttaccaggctttgacctgatt
tctcagttccaaatagaaaaagctgcatcccaaggaattatccagagagtagtgggctcc
acttctctacaagtggcttataaattgggacccaatgtagacttcaggatcccaaccagt
gccatatattccaacggattgcctgatgaatattcctttctaactacttttcggatgact
ggggccacacttcagaaatactggactatttggcagattcaggattcttcaggaaaagaa
caagttggagtgaatctcaatggtccaatgaaaagtgttgaattttcttataagggagcg
gatggaagtccccaaactgcatcatttttgcatttgccattcttgtttgactcccaatgg
cacaagcttatgataagtgtggaagcaaacagtgtcacactttttatagactgtattaaa
atagaatccttaaacataaaaccaaaaggcaaaatcagcgttgatggctttgctgtgctt
ggaaaacttaaaaataatcctgaaatttcagttccgttcgagatccagtggatggtgatt
cactgcgaccccctgcgaccccagcgcgaaggctgcggcgagctgccggcccgggtgagc
ataagccagacggtaatcgagagaggtctccctggtccgccaggccccccgggtccacca
gggccaccaggagttcctggtattgatggtatcgatggggagagaggtccgaatggcccc
cctggtccaccgggtccggatggggatgcaggcaaaccaggatcccccggcctgcctgga
gagccaggagctgatggattcacaggacctgatggctcacgtggagccacaggaccaaaa
gggcagaagggtgagccaggactgccaggtgctcatggacttccaggcaagggacttctt
ggaccacctggtccagctggtgcagcaggacttcctggggaagtaggtcgtgctggtcca
cctggagatccaggaaaaagagggccaccagggccaccaggaccaccgggtcctcgggga
acaattggcctgcaagatggtgacccattgtgtcccaatgcttgtccacctggccgccca
ggacatgctggcttaatgggaatgaagggacagaaaggttcaaaaggagagtctggtgaa
ccaggaaaacaaggttataagggtgaagaaggagaccaaggacccattggtgaagtggga
gctcaaggccctccaggcatcctgggtatcagaggtataactggtataatgggacctaaa
ggtaccaaaggagctcgtgggcttgatggtgaccctggtcctcaaggtcttcctggtgcg
cctggggatcaaggacagagaggtccactgggagaggaaggtccgaagggagaaaggggc
cctcaaggtacaagaggaataaatggtctccctgggcctaaaggcgagtctggcttacca
ggagttgatggccgggaagggatccctggaatgcctggagcaaaaggcgaaccaggaaaa
cctggagctccaggtgatgcagggcttcagggactgccaggtttgccaggctctccgggt
gtgaaaggcattcctgggacaaagggtaatagaggtccccctggggtgccaggtttgatg
ggaaattctggtaaaccgggtgaacgagggccagagggagaagcaggtccaacaggaccc
cggggaccaccaggtagcagaggggagccaggtcctgcaggtcctccaggtttaccaggg
aaattgggtccccagggtgatattggacttcctggactgccaggtcctccaggcctacct
ggtggtaagggtgaccggggctcagtgggtgaaccaggaccaaagggtgaacaaggtgca
cctggagcagaaggagatggaggagaaaagggtgacttaggtgatatgggattgccagga
gcaaagggagctgttggtaatcctggagactctggttcccgtggccctgagggaagtcgg
ggactgcctggcatggaagggccgcgaggctcacccggaccgcgaggcttgcagggcgaa
cagggtgccccagggctccctggcagccaaggtccagctggaaaagaaccaaccgatcag
cacattaagcaggtttgcatgagagtcatgcaagaacaactagctcagctggcagccagt
cttaagaggccagaatttggtgctccaggtttgcccggccgaccagggccaccaggtgct
ccagggcctgctggtgaaaatggcttcccaggacagcttggaccccgtggcttgcctggc
cttaaaggtccccctggtgagatcggtcgtaaaggtcctaaaggtgaaccaggagaaaga
ggagaaagaggatttccaggcagaggactgaaaggctaccctggaccaagaggtcttcca
ggtgaaccaggcaaacccagctacggcagggaaggccgtgatggtgaccgaggtctccct
ggggtggcaggtcagcctggagttcctggtcctcctggccctcccggccctcctgggtac
tgcgagccgtcgtcttgcagaatgcaagctggacagagagttggtaagaacatgaaaggg
ccgtga
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