Citrobacter rodentium: ROD_06501
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Entry
ROD_06501 CDS
T01145
Symbol
dacA
Name
(GenBank) penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
cro
Citrobacter rodentium
Pathway
cro00550
Peptidoglycan biosynthesis
cro01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
ROD_06501 (dacA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cro01002
]
ROD_06501 (dacA)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
ROD_06501 (dacA)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
ROD_06501 (dacA)
Peptidases and inhibitors [BR:
cro01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
ROD_06501 (dacA)
Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
ROD_06501 (dacA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
CBG87425
UniProt:
D2TNF6
LinkDB
All DBs
Position
complement(710590..711801)
Genome browser
AA seq
403 aa
AA seq
DB search
MKTTFSARFLQRMALTTALCTAALSGAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL
AEQNADTRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFL
KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVTALGLKNTHFQTVH
GLDADGQYSSARDMALIGQALIRDVPNEYSVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG
IKTGHTAKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKA
GKEFASEPAWFGDTDRASLGVDKDVYLTIPRGRMKDLKASYLLNTTELHAPLQKNQVVGT
INFQLDGKTIEQRPLVVLQEIPEGNFFGKIVDYIKLMFHHWFG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccactttttccgctcgtttcctgcagcgcatggcgctcaccacggctctttgc
acagccgctctctcaggcgcgcatgccgatgacctgaacattaaaaccatgatcccgggt
gttccgcagatcgacgcggaatcttacatccttatcgattacaactccggtaaagtgctg
gctgaacagaacgccgacacccgtcgcgacccggccagcctgaccaagatgatgaccagc
tatgttatcggccaggcgatgaaagcgggtaagtttaaagaaaccgatctggtgacgatt
ggcaacgatgcgtgggcgacaggtaatccggtatttaaaggctcttcgctgatgttcctc
aagccagggatgcaggtgcccgtctcgcagctgattcgcggcattaacctgcaatccggt
aatgacgcctgcgtggcgatggccgatttcgccgccggcagccaggatgcgtttgtcggg
ctgatgaacagctacgttaccgcgctggggctgaaaaacacgcacttccagacggttcac
ggtcttgacgccgacggccagtacagctccgctcgcgacatggcgttgattggtcaggcg
ctgatccgcgacgtccctaatgaatactcggtctataaagaaaaagagttcacctttaac
ggcatccgtcagctgaaccgtaacggtttgctgtgggacaacagcctgaacgttgacggc
atcaaaaccggacatactgcaaaagctggctacaacctggtggcttccgcaaccgaaggt
cagatgcgtttgatctccgcggtcatgggcggtcgcacctataaggggcgcgaaaccgaa
agtaaaaagctgctgacctggggcttccgcttttttgaaaccgttaatccgctgaaagcc
gggaaagagtttgcctccgaaccggcatggtttggcgataccgatcgcgcctctttaggc
gtcgataaggatgtttatctgaccattccgcgtggccggatgaaagatctgaaagccagc
tacctcctcaataccaccgagctgcatgcgccgctgcagaaaaatcaggtggtgggcacc
attaacttccagcttgacggtaaaaccattgagcagcgtccgctggtcgttctgcaggag
atcccggaaggtaacttcttcggcaaaatcgttgattacattaagctaatgttccatcac
tggtttggctaa
Citrobacter rodentium: ROD_08451
Help
Entry
ROD_08451 CDS
T01145
Symbol
dacC
Name
(GenBank) penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
cro
Citrobacter rodentium
Pathway
cro00550
Peptidoglycan biosynthesis
cro01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
ROD_08451 (dacC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cro01002
]
ROD_08451 (dacC)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
ROD_08451 (dacC)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
ROD_08451 (dacC)
Peptidases and inhibitors [BR:
cro01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
ROD_08451 (dacC)
Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
ROD_08451 (dacC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
CBG87622
UniProt:
D2TQF6
LinkDB
All DBs
Position
933662..934864
Genome browser
AA seq
400 aa
AA seq
DB search
MTHFSTSLRNIAAGSALLFLFAPAVMAAEQTIAAPAVEARAWILMDYASGKVLAEGNADE
KLDPASLTKIMTSYVVGQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDRVA
VADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFRTVHGLDAPGQ
YSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNINVDGMKTGTTA
GAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFVTQ
RVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASFTLSEPQLTAPLKKGQVVGTIDFQLNG
KSIEQRPLMVMENVEEGGFFSRMWDFVMLKFHQWFGGWFS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgacgcatttctctacttcccttcgtaatatcgcagcgggttcagcactgttatttctt
ttcgcgccggcggtcatggcggcggagcaaaccatcgccgcgccggcggtggaggcgcgc
gcatggattttaatggattacgccagcggtaaagtgctggcggaaggtaacgctgatgag
aagctggacccggccagtctgacgaaaatcatgaccagctacgttgtggggcaggcgctg
aaagcggataagattaagctgaccgacatggtaaccatcggtaaagatgcctgggcgacc
ggcaatccggcgctgcgcggttcgtcggtcatgttccttaagcccggcgatcgggtggcg
gttgccgatctgaacaaaggggtaatcattcagtccggtaacgatgcctgtatcgcgctg
gccgactacgttgccggaagccaggagtcctttattggcctgatgaacggctacgcgaaa
aagctggggctgaccaacaccaccttccgtacggttcacggccttgatgcccccggtcag
tacagcaccgcgcgcgatatggcgctgctcggcaaggcgctgattcatgacgtgccggaa
gagtatgccatccataaagaaaaagagtttaccttcaacaagatccgtcagcctaaccgt
aaccgactgctgtggagttcgaatatcaacgtcgacggcatgaaaaccggcaccacggcg
ggggcgggctataacctggtcgcctcggccacgcagggcgatatgcgtctgatatccgtg
gtgctgggggctaaaaccgatcgcattcgctttaacgaatcggaaaaactgctcacctgg
ggcttccgcttctatgaaaccgttacgccgatcaaaccggacgccacctttgtcacccag
cgcgtctggttcggcgacaagagcgaagtgaatctgggcgcgggcgaagccggttcagtg
accattcctcgcggccagttgaaaaacctgaaggccagcttcacgctgagcgaaccgcag
ctgaccgcgccgctgaaaaaaggccaggtcgtcggcaccattgacttccagcttaacggc
aaatcgattgagcaacgtccgctgatggtaatggaaaacgtcgaagagggcggctttttc
agccggatgtgggatttcgtgatgttgaaattccatcagtggttcggcggctggttctct
taa
Citrobacter rodentium: ROD_21491
Help
Entry
ROD_21491 CDS
T01145
Symbol
dacD
Name
(GenBank) penicillin-binding protein 6B
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
cro
Citrobacter rodentium
Pathway
cro00550
Peptidoglycan biosynthesis
cro01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
ROD_21491 (dacD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cro01002
]
ROD_21491 (dacD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
ROD_21491 (dacD)
Enzymes [BR:
cro01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
ROD_21491 (dacD)
Peptidases and inhibitors [BR:
cro01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
ROD_21491 (dacD)
Peptidoglycan biosynthesis and degradation proteins [BR:
cro01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
ROD_21491 (dacD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
CBG88897
UniProt:
D2TPS9
LinkDB
All DBs
Position
complement(2243961..2245133)
Genome browser
AA seq
390 aa
AA seq
DB search
MLLKRRLFIAASLLSLHLSSALAADSVDFAPQPPAIEAGSWVLMDYTTGQILTAGNEHQQ
RNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSV
RDLSRGLIVDSGNDACVALADYVAGGQPQFVAMMNNYVKKLHLQDTHFETVHGLDAPGQH
SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQYNRNGLLWDKSLNVDGLKTGHTSG
AGFNLIASAVDGQRRLIAVIMGAQSPKGREEQARKLLHWGQQNFDTVQILRNGKQVGTER
IWYGDKEKIALGTEQDFWMALPKTEIPHIKAKYVLDTKALEAPIAAHRRVGEIELYDRDK
LVAHWPLVTLEAVGKGGMFSRLSDYFHHKA
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgctgttgaaacgccgcctgtttatcgccgcttctttactctctttgcacctttcttcc
gcgctggctgccgatagcgttgacttcgcgcctcagccgccagcgatagaagcaggatcg
tgggtgctgatggactacaccaccgggcaaattctcaccgccggaaacgaacatcagcag
cgtaatcccgcaagtctgacaaagctgatgacgggctacgttgtcgatcgcgccatcgac
agccatcgcatttctcctgacgacatcgttacggtagggcgcgacgcctgggcaaaagac
aatccggtttttgtcggctcctcgctgatgtttctcaaacagggcgatcgcgtttcggta
cgtgatttaagccgcgggctgattgtcgattcgggtaatgacgcctgcgtcgcgctggcg
gattacgttgccggcgggcagccgcagttcgtcgccatgatgaacaactacgtgaagaag
ctgcatttgcaggatacccattttgaaaccgtccacgggctggatgcgccgggccagcac
agctccgcttacgatctggcggtgctctcccgggcgattattcacggcgaacctgagttc
taccatatgtacagtgagaaaagcctcacctggaacggtataactcagtacaaccgcaac
gggctgctgtgggataaatccctgaacgtcgacggtctgaaaaccggccacacctccggc
gcgggctttaatcttattgcctctgcggtagacggtcagcgccgccttattgcggtaatc
atgggcgcgcagagtccaaaaggccgggaagagcaggcgcgtaaactgctgcactgggga
caacagaattttgatacggtgcagatcctgcgcaacggtaagcaggtggggacggagcgg
atctggtacggcgataaagaaaaaatcgcgctgggcacggaacaggatttctggatggcg
ttaccaaaaacggaaattccgcatatcaaagcgaaatacgttctggatacaaaagcgctt
gaggcgccgattgccgctcaccggcgggttggggaaatcgagttgtacgaccgcgataag
ctggttgcgcactggccgctggtgacgctggaagcggtcggtaaaggcggtatgttctcg
cgcctgagcgactatttccaccataaagcctga
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integrated database retrieval system
