Citrobacter rodentium: ROD_37651
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Entry
ROD_37651 CDS
T01145
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cro
Citrobacter rodentium
Pathway
cro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ROD_37651 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cro03021
]
ROD_37651 (rpoB)
03400 DNA repair and recombination proteins [BR:
cro03400
]
ROD_37651 (rpoB)
Enzymes [BR:
cro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ROD_37651 (rpoB)
Transcription machinery [BR:
cro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ROD_37651 (rpoB)
DNA repair and recombination proteins [BR:
cro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ROD_37651 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
CBG90470
UniProt:
D2TTH1
LinkDB
All DBs
Position
complement(3957772..3961800)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVASKD
YVDESTGELICPANMELSLDLLAKLSQAGHKRIETLFTNDLDHGPYISETIRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVT
DEIHYLSAIEEGNFVIAQANSNLDDDGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIHAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaagtttatcgag
caagatcctgaagggcagtatggtctggaagccgcattccgttccgtattcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggtgaaattccgctcatgactgacaacggtacctttgttatcaatggt
accgagcgtgttatcgtttctcagctgcaccgtagtccaggcgtcttctttgactccgac
aagggtaaaacccactcctccggtaaagtgctgtataacgcgcgcatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtccgtattgaccgt
cgccgtaaactgcctgcgaccatcattctgcgtgcgctgaactacaccacggagcagatc
ctcgatctgttctttgagaaagtaatcttcgaaatccgcgacaacaagctgcaaatggag
ctggtgccggagcgtctgcgtggtgaaaccgcttccttcgatatcgaagcgaatggcaaa
atctacgttgaaaaaggccgccgtatcaccgcgcgtcatattcgccagctggaaaaagac
gatatcaagcatatcgaagttccggttgaatatattgccggtaaagtcgcctcgaaagat
tacgttgatgaatctaccggtgagctgatctgcccggccaacatggagctgagcctcgat
ctgctggctaagctgagccaggctggccacaagcgcatcgaaacgctgttcaccaacgat
ctggaccacggcccgtatatttcagaaacgattcgcgtcgacccgactaacgatcgcctg
agcgcgctggtagaaatctaccgcatgatgcgtccgggcgagccgccgactcgcgaagcg
gctgaaagcctgttcgagaacctgttcttctccgaagaccgctacgatctgtctgcggta
ggtcgtatgaagttcaaccgttctttactgcgtgaagagatcgaaggttccggtatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtgcgcgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctcgataccctgatgcctcaggacatgatcaacgccaaaccgatctccgcg
gcggtaaaagagttcttcggctccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaagcgtcgtatctccgcgcttggcccgggcggtctgacccgt
gagcgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcgcag
actaacgaatatggcttccttgagacgccgtatcgtcgcgtggttgatggcgtagtaaca
gatgaaattcactacctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggatgacgacggccacttcgtagaagatctggtgacctgccgtagtaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtttccacccagcaggtg
gtttccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcgttg
atgggtgcgaacatgcaacgtcaggcggttccgaccctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgctgttgccgttgactccggtgtaactgcggtcgctaagcgt
ggcggtaccgttcagtacgtggatgcctcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctacaacctgaccaaatacacccgctctaac
cagaacacctgtatcaaccagatgccgtgtgtttctctgggcgagccggttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgcttggtcagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtttccgag
cgtgttgtccaggaagaccgtttcaccaccatccacattcaggaactggcgtgcgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttatatcggcgcggaagtgaccggcggc
gacattctggttggtaaggttacgccgaaaggtgaaacccaactgactccggaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgtgaaagactcttctctgcgcgtg
ccaaacggtgtttccggtacggttatcgacgttcaggtctttacccgcgatggcgtggaa
aaagacaagcgcgcgctggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagcgggcctgtttagccgtatccacgctgtgctggtt
tccggcggcgttgaagctgagaagctcgacaaactgccgcgcgaccgctggctggagctg
gggctgaccgacgaagagaaacaaaatcagctggaacaactggctgagcagtatgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgcaaaatcacccagggcgac
gatctggcgccgggcgtgctgaagattgttaaggtctatctggcggtgaaacgccgtatt
cagcctggtgacaagatggcgggccgtcacggtaacaagggtgttatttctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtcgacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtatcggcgacaagattaacgccatgctgaaacagcagcaggaagtcgcgaag
ctgcgcgaattcatccagcgtgcgtacgatctgggcgctgacgttcgtcagaaagttgac
ctgaataccttcagcgatgaagaagttctgcgtctggctgaaaacctgcgcaaaggtatg
ccaatcgcaacgccggtgttcgacggtgcgaaagaagcggaaattaaagagctgctgaaa
ctgggtgacctgccgacttccggtcagatcacgctgttcgacggccgtacgggtgaacag
ttcgagcgtccggtaaccgtaggttacatgtacatgctgaaactgaaccacctggtcgac
gacaagatgcacgctcgttccaccggttcctacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tacggcgcagcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggc
cgtactaagatgtataagaacatcgtagacggcaaccatcagatggagccgggcatgccg
gaatccttcaacgtactgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa
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