Caenorhabditis remanei (nematode): GCK72_009948
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Entry
GCK72_009948 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCK72_009948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_009948
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GCK72_009948
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GCK72_009948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
9807660
NCBI-ProteinID:
XP_003105931
UniProt:
E3MCI6
A0A6A5H5H3
LinkDB
All DBs
Position
III:complement(8219939..8230820)
Genome browser
AA seq
2599 aa
AA seq
DB search
MPLGYVLNSCSCAYIDNLLAHSSVHRAKPHSFMIQRLVVICGRSSPAVANHAANIILSAF
NFCQIDAPAKKFLDEEAALSLFHTILSYATVTQEARSVMEIRGAQRLTAALCDLIAAYTK
IMDDMEASKTLTHLCKKLATVYDPLVVLPFISKLAKSRRLRHYLQPLFLGHCEYTSDTWG
VSPESAEIYNHISRGNFSTQTLIEIVQTFLEKEVKEVIISSSTDPIKLVQYLISCSNQNN
AEIVQALAFMLYSNTKLIPNGTGGNIDMDVQSADTITTARLGDAKFTQPVKDALFNSGRD
ALRRRLEIYGPTLLSSVELFVEELKQAPIQRRLITNSSIANAIIFMNQCNYDLEVGIDKG
RFETPPYYTGGANFIIGLTKYIEEKQIATENDDEAYDWYPDINWIEVIKELDTEEILICR
RTLILFSEIFPIMFQNDPQGFPVSFFYTPWKNWERQLHLYDHMIEHSDVWNLSMYPHTKV
LSPELNLKTIPDDTPAAVQLWNCQEFSNLLLTIGNLQPQMLPTIRQFFSFGVMQSGDVST
LALILSQTQWTPIRQELVRHFLPQFILKSPNVTPILNLAWNDPSLSKHMRQHVIWCLTAM
YTSDNSQLAKILDVAHDIKPTGLSELLNQPAKNLPFMVDLACLASKRDYLNLEKWIEDKE
KTHGEAMTVAVLQYIHKKYQQSQMVAAVVPKPKTATPGVPSDPLHVLIPFVIKKARKPHR
QQFPLLFQVMKENSGRSSSVSSGGHQNVQQASGSQPSQQYASGAGLPSSSAVSQQQPPQQ
ASMQQQISQQAIVSSSAPSQHQIHSQQQPVPGPIQRPAQYPPQSMFPPQPQAQQHPHMMA
QPPPSASQNAQPGMNLLMNMGQFSSGNNRDLLKVVQPAPPPPSSMSPSSQMMRSLIPPLA
QRQNSNPGWHAAPTTPLQRPSGPPTPQQQIDFRSQIQDFVPQGQHQLQRSGSVSGRSGGS
GGQKTGVSSSGFSVGAPIAGSAAAVAAATAQQTSMDDFSSMTFAEDIQEEANSYFEKIYS
VNNAMSVDTLIDLLKKFKAGNDRRERFVLACVVKNLFEEYRFFHEYPERELRTTAAVYGG
IIREDIITNVQFATAVRKVIESLSADSNTMLWTFGIVALQHCRSKLCAYPKVCSMIVNSD
NFSKFPQLLKDYVIAGVKGELPPEGGRHTPVGTHSPSASSTPTPATVPTNWGAVARASST
DPKNQVPANRTGNVLSYTNVDTLVMATNKDGAEIAQPAEAIVDKISFLFNNLSTTNLVQK
KDEVLEMIIEHGEGFTRWLSQYIVMKRVSIEQNFQPLYNQFVTAIDNPYLDQCIKRETFR
NIRILLRTDKKTTVASNYSDRQLLKNLGSWLGAITIARNKPILLNDLDLKSLLLEAYYKG
QAELLFVVPFISKILTACSKTTLFTPTCAWIRSILKVLAELHNEPDLKINLKFEIEVLCK
ELNVDLSQLPLDGILKDTEKLVRVPQQLCEVKVLGRPEAASPVQSQIRLSNSAEQLAGMA
PAIPDQAKPATPQPTEAELQAGAGGSGSQGAEAQVVPNVTHFAYHDINVLTYDGLIPHVK
IVSHLPLFQLHPHAKHLVRPAMIHAIKELIGPVTERALKIAMTVTESLVRKDFALDPEEQ
NLRAASFHMMRAMTAGMAMITCRDPLASTMHANLAQAFSSSLRSSAGTPELKQMIEEASS
TITQDNVELSTNFIVKTACEKATQEIEKRLEGDYQKRIAVKNEQGIYRDEAAAAIHAQLP
KAIATHPGPTDKALMSIYDQFSSRICGFKANAGDELLSTEPGNGSITPVPTQSKEMELVC
QQLHIIIKEVDQTTQAQPHINNAAFQTVCLMREMMKQITVSKDGNQLLQLVSRSTEHLLH
AYRLEGAPSKNLLDVEWARRLRDLFIGLMRLLQNYFPLVELSRRITTAIMQIRSDYKWNL
EGIEILFKQNLLQSVLWDQHLAGSMDNGGNMEAVCFAQKFVRSIGGGDMNRIQFLKDRFP
LTCDQLTKLHQLQSATRTEGINNGINSGAVHPGHQQQQPPVALPMDAAPMPQASAEAMAQ
RGYDDHEMTAKVEVIMREWIGLCYSPTGQRSPQESLAQMIQLMHEHGVLATDDKITQFFR
LCVENCVDISVRVMKSEQMTNGMPTTMIRHRCYYTLDAFVKLMALMIRHSDNGQSQNKIN
LLKKLLNIIVGVLHMDHEIRKQDFNAMPYHRILISLFNEITGPDPLKLLEPIAWSILEAF
GQTFFALQPRRMPGFAFAWLDIVGHRNVIGRLLANTGIAETVDSVKTAATYTQLIISHLK
FLAPFLRNIQLPKSIAILYKGTLRVLLVILHDFPELLCEFHYVICDTIPPNCVQLRNLIL
SAYPHPMRLPDPFALNFKQVDTIPEMAVEPKSNLNMATIIPDNIRVPLDEYLSNRTPVDF
LPNLPTLLQTQNQAGTKYNTTVMNALVLYVGIRAIENLHLKRQRISTLTIAHTSFMDIFQ
NLAIQLDTEGRYLLFNGIANQLRYPNAHTHYFSCVFLYLFKNSTNDTIQEQITRILFERL
VALRPHPWGLLITFIELIKNPTYNFWRYEFTSCAPEIQRLFQNVANTCVPPQGSQIPQAQ
SEGAMLGNSMGANQNPSSN
NT seq
7800 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttgggtacgtactcaacagctgctcgtgtgcttatatcgacaatcttctggct
catagtagtgttcatcgtgcgaaaccacattcgttcatgatacagcgccttgtagtcatt
tgtggtcgttcgtcaccggcagtggccaatcatgcagctaacatcattctctccgctttc
aatttctgtcaaatagatgctccagcgaagaaatttctcgatgaagaagcagctcttagt
ctgtttcatacgatactttcctacgcaactgtaacacaagaagctcgaagtgttatggag
attcgcggagctcagcgactcactgcagctctttgtgatttgattgctgcttatacaaaa
attatggacgatatggaagcgagtaaaactttgacacatttgtgtaaaaagctcgccacc
gtatacgatcctctggtggttcttcccttcatcagcaagctcgccaagagcaggcgtctt
cgtcactatctccaacccttgtttctgggacactgtgaatacacatctgacacgtggggt
gtatctccggaaagtgctgagatttacaatcacatttcacgtggaaacttcagcactcaa
actttgatcgaaatagttcaaacttttctggagaaggaagtgaaagaagttataatcagt
tcatcgactgatcctatcaaactagttcagtacttgatctcttgttcgaatcaaaacaac
gcggaaatagttcaagcacttgccttcatgctttactccaatacgaagctaattccaaat
ggtactggtggaaacatagatatggatgttcaatcagcggatacaatcaccactgcaaga
cttggagatgcgaaattcacgcaaccggtcaaggatgctttattcaattctggacgagat
gctctgcggagacgattagagatatatggtccaactctgctcagctcagttgaactattt
gttgaagagttaaaacaagcgcccatacagagaagactcattacaaattcttcaatagcc
aatgctataatcttcatgaaccagtgtaattacgacttggaagtagggatcgacaaggga
cgattcgaaacaccgccatattacacaggaggggcaaacttcatcattggtttaaccaaa
tatattgaagaaaaacaaatcgctactgaaaatgacgatgaagcatacgattggtatcca
gatattaactggattgaagttattaaagagctggatactgaagaaattttaatctgtcgt
cgcacgttgattctcttctctgaaatcttcccgatcatgttccaaaatgaccctcaaggc
ttccctgtttcatttttctacacaccatggaaaaattgggaacgtcaactccatttatat
gatcacatgattgagcattcggacgtttggaatctttctatgtatccacacacaaaagtg
ctttctccagagcttaatttgaagacaatacccgatgacacgccggcggctgttcagctg
tggaactgtcaagaattcagtaaccttctactcacaatcggcaatttacaacctcaaatg
cttccaacgatccgacagtttttttctttcggggttatgcaatctggagatgtttctact
ttagcattgattctgtcgcaaacccaatggactccaattcgtcaagagttggtccggcat
ttcttgcctcagttcattcttaaaagccctaatgtcacaccaattctgaatttggcatgg
aatgacccgagtttatcgaagcacatgcgtcaacacgtcatttggtgcctgactgctatg
tatacttctgataattcacaattggctaaaatcctcgacgtagcccacgacatcaaacca
actgggctctctgagctgttgaaccaaccggcaaaaaatcttcccttcatggtagatctc
gcatgtcttgcttcgaagcgggattatttgaatttggaaaaatggatcgaagacaaagag
aaaactcatggcgaggcgatgactgttgcagtgttacagtacattcacaagaaataccaa
caatcacagatggtggcagctgtagttccgaaaccgaagacagcaacccctggtgttcca
tcggaccctctccacgtgctcattccgtttgttatcaaaaaagcaaggaagcctcatcgg
caacaattccctttactcttccaggtaatgaaagagaactcgggtagaagttcgtcagtt
tcatctggcgggcatcaaaatgtacagcaagcaagtggttcacagccatcacagcagtat
gccagcggcgccggactaccatcatccagtgccgtttctcaacagcaaccaccacaacaa
gcttctatgcaacaacaaatttcacaacaggctattgtctcgtcatctgcaccatcacag
catcaaattcacagtcagcagcaacctgttccgggaccaattcaacgaccggcacaatat
ccgcctcagtcgatgtttccaccacaaccccaggctcagcaacatccgcacatgatggct
caacccccgccaagtgcttcacaaaatgctcaacctggaatgaacttgctgatgaatatg
gggcagttttccagcggtaacaaccgagacctgctcaaagtcgttcagccggctccaccc
ccaccttcatcgatgtctccatcatcacaaatgatgcgttcattgatacctcctcttgct
caacgacagaattcaaatcccggttggcacgctgcaccaacaacaccactgcagagacca
tctggaccacctactcctcaacagcagatcgatttccggtcacaaattcaagacttcgta
ccacaaggccagcatcaacttcaacgaagcggtagcgtcagtggaagaagtggaggaagt
ggtgggcagaagactggtgtttcaagctccgggttctcagttggagctccgattgctggt
agcgcagctgcggttgctgcagctactgcacagcaaaccagcatggacgatttctcatca
atgacgtttgctgaggacatccaggaagaggcaaactcgtacttcgaaaaaatttacagt
gtgaataatgcaatgtctgtagatacgctgattgatttgctcaaaaaattcaaggcgggt
aatgatcgtcgagaacggtttgtactcgcttgtgtggtcaagaacctattcgaggagtac
cgatttttccatgagtatccagaaagagaactgcgaactactgctgccgtgtatggagga
ataatacgagaagatatcatcacgaatgtacaatttgcaactgctgttcgcaaagttatt
gagagtttgagtgcagactcaaataccatgctctggacttttggaatcgttgcactacaa
cactgtagaagcaagttgtgtgcttatcctaaggtatgctcgatgatagtgaacagtgac
aacttttccaagttccctcagctactgaaggattatgttattgccggcgttaaaggagag
ctcccacccgaaggtggtcgtcatacacctgtcggaacacattcaccgtctgcctcatcg
acaccaacaccagccaccgtccccaccaactggggagctgttgcgcgcgcttcctcaacc
gacccgaaaaatcaagttcccgcaaatcgaacaggcaacgttctttcatacacaaatgtg
gatacacttgttatggcgacgaacaaggatggagcagagattgcacaaccagctgaagca
atagttgataaaatttcctttttgttcaacaatttgtcaacgacgaatttggtccagaag
aaggatgaggtccttgaaatgataattgagcatggagaaggtttcacacgatggctctct
caatacattgtcatgaaaagagtttcaatcgaacagaacttccaaccactctataatcag
tttgttactgctattgataatccataccttgatcaatgcatcaagcgagagaccttccgt
aatattcgcatccttctacggaccgataagaagaccaccgtcgcgtctaactacagtgac
agacagcttttgaaaaatctcggaagttggcttggagctattacgatcgcaagaaataaa
ccgattctactcaacgatttggatttgaagagtttacttcttgaagcgtactacaaagga
caggcggaattattgttcgtggttccattcatttcgaaaattctgacagcctgttctaaa
acgaccttgtttacgcctacatgtgcttggattcgaagtattttgaaagttttagccgaa
ctgcacaatgagcccgatctcaagattaatttgaaatttgagatagaggttttatgcaaa
gaattaaacgtggatctcagtcagctacctttggatggaattctcaaagatacagagaag
ttggttcgtgtacctcaacaactttgtgaagtgaaagtactcggacgacccgaagcagca
agccccgttcaatcacaaattcgcttgtccaactcagctgaacaactcgctggaatggca
ccggcaatccctgatcaagctaaaccagctaccccacaaccaacggaagcagaacttcag
gctggtgccggtggatctggatcgcaaggggcagaagctcaagtggttcccaacgtgact
catttcgcttatcacgatataaatgttttgacttacgatggactcattccacatgtcaag
attgtctcccatctaccattgttccagttgcatccacatgccaagcacttagtccggcct
gctatgattcatgcaatcaaagagttgattggacctgttaccgaacgagcattgaaaatc
gcgatgacagtgactgaatcgttggttcgcaaagattttgccctagaccctgaagaacag
aacttgcgagcagcttcgtttcatatgatgcgagcaatgacagctggtatggcaatgatt
acttgccgcgacccacttgcaagtacgatgcatgctaacttagcccaggcgttctcttca
tctctccgctcttctgctggaactccggaattgaaacaaatgatcgaagaggcttcgtca
acaattacccaagataatgtcgaactgtccaccaatttcatcgtcaaaacagcatgcgag
aaagcaactcaagaaatcgaaaaacgcctcgaaggtgattatcagaagcgaattgcagta
aagaacgagcaaggaatataccgagatgaggctgccgctgcgattcatgctcaacttcca
aaagcaattgctacgcatcctggacccactgataaagctttgatgagcatttacgatcag
ttcagcagtagaatctgtggttttaaggcaaatgcaggtgacgaacttctgagcacagag
ccaggaaacggatcgattacaccagttccaacgcaaagcaaggaaatggagcttgtatgc
caacaacttcacatcattattaaggaagtcgatcaaacaactcaagctcaaccccatatc
aacaacgctgccttccagacagtatgcttgatgcgagaaatgatgaaacaaataactgtc
tccaaagatggcaaccagttgttgcaacttgtttcgagaagtacagaacacctgttgcat
gcgtacagacttgaaggagcaccatccaaaaacttgctcgatgttgaatgggctcgtcga
cttcgtgacttgtttattggattaatgcgccttctccagaattattttccattagtcgaa
ctctctcgtcgaatcacaacagccatcatgcaaattcgttcggactataagtggaacctt
gagggaatcgaaattcttttcaaacaaaacttgcttcagtcagttctctgggatcagcat
ttggctggaagcatggacaatggtggaaatatggaagcagtttgtttcgcccaaaaattt
gttcgaagcattgggggcggcgatatgaaccgtattcaattcttgaaagatcgattccca
ttgacatgtgatcaactcacaaagcttcaccagcttcaatcggctactcgaacagaagga
atcaataacggtatcaattccggtgcggtccatcctggacatcagcaacagcaacctcca
gttgccttaccaatggatgcagctcccatgccacaagcatctgccgaagcaatggctcaa
agaggatatgacgatcacgaaatgacagctaaagtggaggttatcatgcgagaatggatc
ggactttgctattcgccgactggacaacgaagccctcaagaatcgctcgcgcaaatgatt
cagttgatgcacgaacatggagttctagccactgatgacaagatcacacagttcttccgg
ctatgtgttgaaaattgcgttgacatttctgtgagagtcatgaaatcggagcaaatgact
aatggaatgccaacaacaatgatcagacatcgatgttattacactttggatgcgttcgta
aaattgatggctctaatgattagacattcggacaacgggcagtcacaaaacaagatcaat
ttgttgaaaaaacttctgaacattattgttggcgtattacacatggatcacgaaattcga
aaacaagatttcaacgcgatgccttatcatcgtattcttatcagtttgttcaacgaaatc
actggtccagatcctttaaaattgctcgaacccatagcctggagcattttggaagctttc
ggacaaacattctttgcacttcaaccacgtagaatgcctggattcgcatttgcctggctc
gacatagttggacatcgtaatgtaattggacgtcttctggccaacacgggaattgctgaa
accgttgattcagttaaaacggctgcaacatacacacaattgattatttctcatttgaag
tttttggctcctttcctccgaaatatacaacttccgaagtccatagccatactttacaag
ggaactcttcgtgttcttctcgtcatccttcatgatttcccagagctcctgtgtgaattc
cactatgtcatctgtgacactattcctccaaactgtgtgcaactgcgtaatctaatacta
tcggcgtatccacacccaatgcgtcttcctgatccattcgcactgaacttcaaacaagtt
gacacgattccagagatggctgttgaacctaaatcaaacttgaacatggctacaatcatt
ccggataatattcgagttccattggatgaatatttatccaatcgtacgccagtcgatttc
ctcccgaatctgccgactctgttgcaaactcaaaatcaagctggtaccaagtacaacaca
actgtcatgaatgcgcttgtcttgtacgttggaattcgagcaatcgaaaacttgcatttg
aaacgtcaacgcatttctacactgaccatagcacatacttcattcatggacattttccag
aatttggcgattcagctggatactgaaggaaggtacttgctgttcaacggaattgccaac
caactgcgttacccgaatgctcacactcactacttcagctgtgtctttttatacctattc
aaaaactctacaaacgacaccattcaggaacaaataacgcgtattctttttgaacgtctt
gtcgccctccgaccacatccctggggacttttgatcacattcattgagctcatcaagaat
ccaacgtataacttctggcgttacgagttcaccagttgcgctcctgaaattcaaagattg
ttccaaaacgtggctaacacatgtgtgccacctcaaggatctcaaattccgcaagcacaa
tcggaaggtgcaatgctcggaaattctatgggagctaaccaaaatccatcttccaattaa
DBGET
integrated database retrieval system
