Chromobacterium rhizoryzae: D1345_18730
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Entry
D1345_18730 CDS
T05688
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
crz
Chromobacterium rhizoryzae
Pathway
crz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
crz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D1345_18730 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crz03021
]
D1345_18730 (rpoD)
Transcription machinery [BR:
crz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D1345_18730 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
DUF6659
Motif
Other DBs
NCBI-ProteinID:
AXT48070
LinkDB
All DBs
Position
complement(4103738..4105669)
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AA seq
643 aa
AA seq
DB search
MAASPENQKDVQENETEVMSLEEQRKRLRQLIALGKERGYLTYAEINDHLPEDVSDAEQI
ENIITMISGLGIQVYDEAPDADTLLMSDATPPVADEDAVEEAEAALSSVDSEFGRTTDPV
RMYMREMGSVELLTREGEIEIAKRIEDGLKYMIQAISACPGTIAEVLELVERVGRDEVRV
DEVVDGFIDLNAPSEEEAAFAAQADEDELLDAEAEEEEEEEEEEGDAADAAGINLEELKQ
HALEHFAGVRMLFDKMVKVLSAKGAQSKEYLELQDAITTEFMLVRFSTRQVESLCDSLRS
RVNEIRTYERDIQDICVSRVRMERAHFIKVFPGNETNLDWVENEIHSGKGWAEALTRFKH
AIIEKQTKLSELQDRAMLPIKALKEINRQMSAGESKARRAKKEMIEANLRLVISIAKKYT
NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINKMNRISRQILQETGHEPDPAELAEKMEMPEEKIRKIMKISKEPISMETPIGDDD
DSHLGDFIEDQNNLAPSDAAMYSSLKDATKEVLDTLTPREAKVLRMRFGIDMNTDHTLEE
VGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLDNEPGGQ
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctctcccgaaaatcaaaaagacgtgcaggaaaacgaaaccgaagtgatgagc
ctggaagagcagcgtaaacgcctgcgccagctgatcgccttgggtaaagagcgtgggtat
ctgacctacgcggaaatcaacgaccacctgccggaagacgtgtccgacgcagagcagatc
gaaaacatcatcacgatgatttccggtctgggcatccaggtttacgacgaagcgccggat
gcggacaccctgctgatgtccgacgccactccgccggtggccgatgaagacgccgtggaa
gaagccgaagcggcgctgtcctcggtggattccgaatttggccgcaccacggatccggtg
cgcatgtatatgcgcgaaatgggttcggtggagttgctgacccgcgaaggcgagatcgaa
atcgccaagcggatcgaagacggcctgaagtacatgatccaggcgatttcggcttgtccg
ggcaccatcgccgaagtgttggagctggtggaacgcgtcggccgcgacgaagtgcgcgtg
gacgaggtggttgacggcttcatcgatctgaacgcgccgtccgaggaggaggccgcgttc
gccgcgcaggcggacgaggacgagttgctcgacgctgaggccgaagaggaagaggaagaa
gaggaggaggaaggcgatgccgccgacgccgccggtatcaacctcgaagagctgaagcag
catgcactggagcacttcgccggcgtgcgcatgttgtttgacaagatggtcaaggtgctc
tccgccaagggtgcgcagagtaaggaatacctggagctgcaagacgcgatcaccacggag
ttcatgctggtgcgcttctccacccgccaagtggaaagcctgtgcgactcgctgcgcagc
cgcgtcaacgaaatccgcacttacgagcgcgacatccaggatatctgtgtcagccgcgtg
cgcatggagcgtgctcacttcatcaaggtgttcccgggcaacgagaccaatcttgattgg
gtggaaaacgagatccattcgggcaagggctgggcggaggcgttgacccgcttcaaacac
gcgatcatcgagaagcagaccaagctgtccgagttgcaagatcgtgcgatgctgccgatc
aaggcgcttaaggaaatcaatcgccagatgtcggcgggcgaatccaaggcgcgccgcgcc
aagaaagagatgatcgaggccaacctgcgtctggtgatctccatcgccaagaagtacacc
aaccgcggcctgcagttcctcgatctgatccaggaaggcaatatcggtttgatgaaggcg
gtggacaagttcgaataccgccgcggctacaagttctcgacctacgccacctggtggatt
cgccaggcgatcacccgctccatcgcggaccaggcgcgcaccattcgtattccggtgcac
atgatcgagaccatcaacaagatgaatcgcatcagccgtcagattctgcaggaaaccggc
catgagccggacccggccgagctggcggaaaagatggagatgccggaagagaagattcgc
aagatcatgaagatttccaaggagcccatctccatggaaaccccgatcggcgacgacgac
gattcccatcttggcgatttcatcgaagaccagaacaacctggcgccgtccgacgctgcg
atgtattccagcctgaaggacgccaccaaggaagtgctggacacgctgaccccgcgtgag
gccaaggtgttgcgcatgcgttttggcatcgacatgaacaccgaccacacgctggaagag
gtgggcaagcagttcgacgtgactcgcgagcgcatccgccagatcgaagccaaggctctg
cgcaagctgcgtcacccgacccgttcggaacgcctgcgcagcttcctggacaacgagccg
ggcggtcagtga
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