Castanea sativa (European chestnut): 142610793
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Entry
142610793 CDS
T11266
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142610793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142610793
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
142610793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_14
TPR_16
TPR_19
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_9
TPR_7
TPR_10
BTAD
Motif
Other DBs
NCBI-GeneID:
142610793
NCBI-ProteinID:
XP_075638854
LinkDB
All DBs
Position
1:16492572..16502845
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AA seq
1183 aa
AA seq
DB search
MEKTEEEEESEEVVVRRLEESVNAHPDDPSLHFDLGVRLWENGGEESNYKEKAAEHFVIS
AKLNPQNGAAFRYLGHYYSGVSLDTQRGLKCYQRAVSLNPDDLQSGEALCDLLDKDGKES
LEVAVCREASEKSPRAFWAFRRLGYLQAHQKKWPEAVQSLQHAIRGYPACAELWQALGLA
YQRLGRFTAALKSYGRAIELDNTNVFAMIESGNIFSMLGSFKEGVERFKQALEISPESVS
ARYGLASGLLGLAKAWINMGAFRWGASLLEEASEVAKASTHLAENMSCIWKLQGDIQLAY
AKCFPWMEEGQGLEFDVETFNASILSWKKTCILAAISAKCSYQRALHLAPWEANIYTDIA
ITADLISSLTMSDGNDFNDWQLSEKMALGALLLEGNNYEFWVALGCLSDHNALKQHALIR
GLQLDVSLAVGWAYLGKLYREEGDNQLARKAFDCARSIDPSLSLPWAGMSADFNARDPSP
DEAFESCLRAVQISPLAEFQIGLAKLALFSGHLSSSQVFGAIQQAVQHAPQYPESHNLYG
LVCEARFDYQSAAAAYRLARCAICSFPDSVPKSHTRDISLNLARSLCKAGNAIDALQECE
DLKKEGMLDMEGLQVYAFSLWKLDKCDLALSVLRNLAASVSAMEQTSVAAPVSFICRMLY
FMSGLDSAVSSILKMPKELFQNSGISFIVSAIHTLDTSNRLEPVVSSSRHFLTSLEEITE
MHFLIALGKLVKHGTEFCLGFQSGVAHLRKALHMYPNSSLIRNLLGYLLLSSKEWNDTHV
ATRCCNVDSTDYQNKGGLKSASEILGAGAVACYAIGNSNPKFSFPSCTHQCLNGHGAIQQ
LQKCLRREPWNHNIRYLLILNLLQKAREERFPHHLCIILKRLMSVALSSEVYSKTDKCYQ
KFQLLLCASEISLHSGNKIGCIDHAKNASKLLLPDAYLFFSHLQLCRAYAVEGDIINLQK
EYIRCLELKTDYHIGWICLKFVESQYHVQTDLNILDLCFKECSTERDYSWNMWMAIFNLV
LGLISIWNQDFLSAEEFLAQACSLAGAESCLFLCHGATCMELSRQSRGSQFLSLAVKSLT
EAQKTSLIPLPVVSVLLAQAEGSLSSKEKWERNLRLEWFAWPPEMRPAELFFQMHLLARQ
SKSDPKSPSNVEFCQSPEKWVLRAIHTNPSCIRYWKVLQKLMT
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaacggaagaagaagaagaaagcgaagaagttgtcgtgagacggttagaggag
tcagtgaatgctcatcctgatgatccttctcttcactttgatctcggagtgaggttgtgg
gagaatgggggagaagaatcgaactataaggaaaaagcggcggagcactttgtaatatcg
gcgaaactaaaccctcaaaacggtgccgcatttagatatttagggcactattactcggga
gtttcccttgatacccaacgtggtctcaagtgctatcagagagctgtttcactcaatcct
gatgatctccaatccggggaagcattgtgtgatttgttggataaagatgggaaggagagt
ttggaagtggcagtgtgcagagaagcttcggaaaagtcaccaagagctttttgggcattt
cggagattgggttacttgcaggcacatcaaaagaaatggcctgaagctgtacaaagtctt
caacatgccattcggggctatcctgcctgcgctgagttatggcaagctttgggtcttgct
taccagcgtttaggcaggttcactgcagctcttaagtcttatgggcgagccatcgaattg
gacaatacaaatgtatttgctatgattgaaagtggaaacatcttttcgatgcttggctcc
tttaaagagggagttgagcggtttaagcaagctctagagatttcacctgaaagtgtgtct
gcacggtatgggcttgcttctgggctacttggtttggcaaaggcatggattaacatggga
gcattcagatggggagcttcattattagaggaagcatctgaggttgcaaaagcaagtaca
catttggctgagaatatgtcatgtatttggaaattacagggtgatattcagcttgcatat
gcaaagtgttttccatggatggaggaaggccagggtttagaatttgatgtggaaactttt
aatgcttctattctttcttggaagaaaacctgcattttagctgccatatctgccaaatgt
tcttatcagcgagctttgcacttggccccatgggaagctaatatctatactgacattgca
ataactgcagatcttatatcgtccctaaccatgagtgatggaaacgacttcaatgattgg
cagctatcagagaagatggctttgggggctttgttacttgagggtaacaattatgagttt
tgggtagcattgggatgcttgtctgaccataatgcattgaaacaacatgccttaatcagg
ggattgcaattggacgtatctctagctgttggttgggcataccttgggaagctctatcgg
gaagagggtgacaaccaattggctaggaaagcatttgattgtgccagaagtatagatcct
tcgctttcattaccatgggcaggcatgtcagcggattttaatgctagggatccttcacca
gatgaagcttttgaaagctgcttgcgagctgtgcagatatcacctcttgcagaattccaa
attggtcttgcaaagcttgctctgttttcagggcatctctcatcttcacaggtttttgga
gctatccagcaggccgttcaacatgcacctcaatatcctgaatcccataatttatatggg
ctggtttgtgaggcaagatttgattatcaatctgctgctgctgcttatcggctagcacgc
tgtgcaatctgcagttttccagacagtgtcccaaaatctcataccagagatatatcatta
aatttggcaagatctctttgtaaggcagggaatgctatagatgctttgcaggaatgcgaa
gatttgaagaaagaaggtatgcttgacatggaaggccttcaagtatatgctttctcttta
tggaaacttgataaatgtgacttagctctttctgtgttgagaaatctggctgcgagtgtt
tctgcaatggaacagacatctgtggccgcccctgttagtttcatctgtagaatgctgtat
ttcatgtctggactagattcagcagttagtagtatactgaaaatgccaaaggaactcttt
cagaattcaggaattagttttatagtgtctgccattcatactcttgatacatctaatcgg
cttgagccagttgtttcaagcagccggcactttcttacatctcttgaagagatcactgaa
atgcactttttgatagcacttggtaaactggtcaaacatggaacagaattttgccttgga
tttcaatctggtgtggctcatcttagaaaagctcttcacatgtaccctaacagtagtttg
ataaggaacctacttggctatcttttgctatctagcaaggaatggaatgatactcacgtt
gcaaccaggtgctgcaatgtagacagcactgactatcaaaataaaggaggtttgaaatca
gcaagcgaaatccttggtgctggagcagttgcttgttatgccattggcaatagcaatccc
aagttttctttcccatcatgtacacaccagtgcctgaatggacatggagctatccagcag
ttgcagaaatgcctgcgtcgagaaccatggaatcataatatccgttacttgcttatactc
aatttactacaaaaggctcgtgaagagagatttcctcatcatctctgtattatactcaag
cggttaatgtctgtggccctttctagtgaagtttactctaagacagacaagtgttatcaa
aagtttcagcttttactttgtgcttctgagatcagcttgcatagtgggaataaaattggc
tgcatcgaccatgccaaaaatgcttcaaagcttttgcttcctgatgcttatctcttcttt
tcacacttacaattatgtcgtgcctatgctgtagaaggtgatattataaatcttcagaaa
gagtacataagatgcttggagctcaagacagattatcatattggttggatatgtcttaaa
tttgtggaatctcaatatcatgtgcaaactgatttgaacatcttagacttgtgctttaaa
gaatgctcaacagagagggattattcatggaatatgtggatggctatatttaatctggtg
ttgggattgatttctatatggaaccaggatttcctttctgcagaagagtttcttgcacaa
gcttgttctttggctggtgctgagagctgcctctttctctgtcatggtgccacctgcatg
gagctttccaggcagtcacgtggttcacagttcttatcacttgctgtaaagagtctcact
gaagctcaaaaaacttctctcattcccttacctgttgtctcggtgttgctggctcaggca
gagggaagcctcagttctaaagagaagtgggagagaaacctccgtcttgaatggtttgct
tggccaccagagatgaggcctgcagaactcttctttcaaatgcatttgcttgctagacaa
tcaaaatcagatcccaaatctccatccaatgtggagttctgtcagagtccggagaaatgg
gttcttcgggcgatccatacaaacccttcctgtattagatattggaaggttttgcagaag
cttatgacatga
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integrated database retrieval system
