Castanea sativa (European chestnut): 142630427
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Entry
142630427 CDS
T11266
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142630427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142630427
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
142630427
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_NOL10_N
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
142630427
NCBI-ProteinID:
XP_075660539
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Position
4:34099966..34105724
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AA seq
439 aa
AA seq
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MENGSLEETLQDGKLYRNLNSLIVAHLRDNNLNQAASAVASATMTPLNVEAPPNKLLELF
AKGLAVEKDDMLKGVTSSALYDLGTSLPAAAYGSIPAPRTATVDFSAVQDAKGSSKSFPK
HETRHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEVAKIKQMMLPDARDGPVRPVIR
TFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHP
SGDFLLAGTDHQIPHLYDVNTFQCFLSSNVPEIGVNGSINQVRYSSTGGMYVTASKDGAV
RLWDGVTANCVRSIVGAHGAAEVTGANFTKDQRFVLSCGKDSTVKLWEVGTGRLVKQYLG
ATHLQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVARWPSNHIGAPRWLEHSPIE
AAFVSCGTDRSIRFWKEVL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggagaacggcagcttggaggagactctgcaagatgggaagctctacagaaacctcaat
tctctcattgttgctcatcttagagacaacaatctcaaccaggctgcaagtgcagttgct
tctgcaactatgacaccattgaatgttgaagccccacctaataagcttcttgagctcttt
gctaagggtcttgcagtggagaaagatgacatgttaaaaggggtcacttcatctgcattg
tatgatttgggcacatcattgcctgctgctgcatatggctcaatccccgctcctcgcacc
gctactgttgatttcagtgctgtgcaagatgcaaaaggctcatcaaagagttttccgaag
catgagacacgacatctttcagagcacaagaatattgccagatgtgcaagatttagtcct
gatgggaggtttgttgccactggaagtgcagacacatcaataaagctctttgaggttgca
aagattaagcaaatgatgctgccagatgcaagggatggtcctgtgcggcctgtcatacga
acattttatgaccatatacaaccaataaatgatttggatttccatcctcaaaatactgtt
ctgatatctggggccaaagaccacactataaagttctttgatttttccaaaatgactgca
aagagagcattcagagttatccaggatacacataatgtgcgatctgtatcttttcatcct
tctggagattttcttttagcaggaactgatcaccaaatcccacatttgtacgatgtcaat
accttccagtgctttctatcttcaaatgtcccagagataggtgttaatggatccataaat
caggttaggtattcatctacaggtggcatgtatgttacagcatctaaagatggtgctgta
cggttatgggatggagtaactgcgaattgtgtgcgatccatagtcggtgcacatggagca
gctgaggtcactggtgcaaattttacaaaggatcaaagatttgttctctcctgcgggaag
gattctactgtgaagctttgggaagttggcactggaagattggtcaagcaatatcttgga
gctacacatctgcagctgcggtgccaggctgttttcaatgacactgaagaatttgtacta
tccatagatgaaccaagcaatgagattgtaatttgggatgctctgacagcagagaaagta
gcaaggtggccttccaatcatattggtgcaccccgctggcttgagcattcaccaatagag
gcagcctttgtttcctgtggcactgataggtctattcggttctggaaggaagttctctag
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