Cololabis saira (Pacific saury): 133425353
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Entry
133425353 CDS
T09849
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133425353 (scn1lab)
Ion channels [BR:
csai04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133425353 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Spem1
ATP-synt_B
DICT
IQ
FUT8_N_cat
New_glue
Motif
Other DBs
NCBI-GeneID:
133425353
NCBI-ProteinID:
XP_061572149
LinkDB
All DBs
Position
24:complement(17947252..18044279)
Genome browser
AA seq
2012 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEARRPRAERRSDGDDDNGPKPNNDLEAGK
SLPFIYGDTPAHLVSTPLEDLDTYYSNQKTFIVLNRGKTIFRFNATSALYILSPFNPLRK
IAIRILVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLTDPWNWLDFSVISMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRMLTNATDGSNVTDYINTTVG
QNESSFDWDDYINDERNYYYLPGRRDALLCGNGSGAGLCPEGFLCIKAGRNPDYDYTSFD
TFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLILAVVAMAY
DEQNQATIEEALQKEEEFQAMLEQLKRQQEEAQQVAAAAAAAESGEYSGRGDPTSESSSG
TSKLSSKSAKERRNRRKKRKQREEEEERGVCDRFHKSQSEDSIKRSSFRFSIDANRLSYE
KRCSSPNQSLLSVRGSLFSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFEESDSRRG
SLFLPRRLERRCSAVSQTSLVVPRIMLPANGKMHCTVDCNGVVSLVGGTSVTTSPVGLLL
PEGTTTDTEVKKRRSGFLQPSMDYLDEPGARQRAMSVASILTNTMEELEESRQKCPPCWY
RFANTCLIWSCCPAWLKIKDVVLTVVMDPFVDLTITICIVLNTLFMAMEHYPMTKEFDNV
LTVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSVLR
SFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYNEC
VCKISEECKLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMVIG
NLVVLNLFLALLLSSFSADNLAATDEDSEMNNLQVAVGRIQRGVSFIKSTMRQFLQSLCF
GGAAKGSCLAEESKPLDELHSNGKGNCISNHTALEITKDVSGVYTMEGNGRPGGGLVVGV
GMGGDTPGKYPTEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEGSKEK
IDVEPLPRSSSEGSTVDIRPPGDGEDSVELEPEESLDPEACFTEGCVSRFQCCQIDEEGS
KFKSWWTLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEYADKVF
TYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKSLRTLR
ALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYCVNT
TTDEPFPIDVVNNRSDCLRLANDSARWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAA
VDSRGLEDQPEYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMT
EEQKKYYNAMKKLGSKKPQKPIPRPANAFQGCVFDFITKQAFDIVIMILICLNMVTMMVE
TDDQTKDMDNILYWINLVFIVLFTGECVLKMISLRYYYFTIGWNIFDFVVVILSIVGMFL
SEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVM
FIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNKREPDC
DSQMEHPGNNYKGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLS
EDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDPPLRMPKPNLIQLISMDLPMVSGER
IHCLDILFAFTKRVLGEGGEMDVLRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAII
IQRAFRRYMIHLAMKKASALYKEKLKEGVRDPDKDVMVVKFTENSTSEKTEMTPSTASPP
SYNSVTKSDKDKYEQDNREKENKGKDLKDRKK
NT seq
6039 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgcttgtaccgcccggacctgacagcttccgccccttcgtccccgagtcg
ttggccgccatcgagaggcgcatcgccgaggaggaggcccggagaccgcgggcggagcgc
cgcagcgacggcgacgacgacaacgggcccaagcccaacaacgacctggaggcggggaag
tctctccccttcatctacggggacacgcctgcacacctggtgtccacccccctggaggac
ctggacacctactacagcaaccagaagacgttcatagtattgaatcgtgggaagacaatc
ttccgtttcaatgccacctctgccttgtacatcctaagccccttcaaccctctgaggaag
atcgctattaggattttagtgcactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgaccctcagtaaccccccagaatgggccaagaatgtagagtac
acattcacagggatttacacctttgagtccctgataaagatcctggccaggggcttctgt
gtggggaagttcactttcctgacggacccctggaattggctggatttcagtgtaatttcc
atggcgtatataacagagtttgtaaacctaggcaatgtttcagctctgcgcacattcaga
gtattgcgagctttgaaaactatctcggtaataccaggcctgaaaaccatcgtgggcgct
ctgattcagtccgtaaagaagctgtcggacgtgatgatcctcaccgtgttctgcctcagc
gtcttcgccctcatcggcctgcagctcttcatggggaacctgaggcagaagtgtgtgcgc
atgctaaccaacgccaccgacggcagcaacgtcaccgactacatcaacaccacggtgggg
cagaacgagagctccttcgactgggatgactatataaacgatgagcgcaattactattac
ctcccgggccggagggatgctctgctctgtgggaacggcagtggcgcaggtctctgtccg
gagggcttcctatgcatcaaagcgggccggaacccggactacgactacaccagcttcgac
accttcagctgggctttcctctctctgttccgcctcatgacccaggacttctgggaaaac
ctctaccagcagacgctgcgtgcagcagggaagccctacatgatcttcttcgtgctggtg
atattcctgggctccttctacctggtcaacctgatcctggccgtggtggccatggcctac
gacgagcagaaccaggccaccatcgaggaggcgctgcagaaggaggaggagttccaggcc
atgctggagcagctgaagaggcagcaggaggaggcacaacaggttgccgcggcagcagcg
gccgcagagagcggagagtacagcggccgaggggaccccacctccgagtcctcctcgggg
acgtccaagctcagctccaaaagtgccaaggagcgacgcaacaggcggaagaagaggaag
cagagggaggaggaggaggagagaggggtgtgtgaccggttccacaagtctcagtcggag
gacagcatcaagaggtccagcttccgcttctccatcgatgccaaccggctgtcgtatgag
aaacggtgctcctcaccgaaccagagtctcctcagcgtccgcggctccctgttctccccg
cggaggaacagccgcgccagcctcttcagcttccgcgggcgagcgcgcgacatgggctcg
gagaacgacttcgccgacgacgagcacagcaccttcgaggagagcgacagccgccggggc
tccctgttcctgccccgccgcctggagcgccgctgcagcgccgtgagccagaccagcctc
gtcgtgcccaggatcatgctccccgccaacggcaagatgcactgcacggtggactgcaac
ggcgtggtgtcgctggtcggggggacgtctgtcaccacctctcctgtaggcctcctgctg
cccgagggcacaacaacagacacggaggtgaagaagcgcaggtcggggttcctgcagcca
tccatggactatttagatgaaccgggggcgcgacagagagccatgagtgtggccagcatc
ctcaccaacaccatggaagagctggaagagtcgaggcagaagtgcccgccctgctggtac
agatttgccaacacgtgtctgatctggagttgttgtcccgcgtggctgaaaatcaaagat
gtcgtcctcacggtggtcatggaccccttcgttgatctgaccatcactatttgcatcgtc
ctcaacacgctcttcatggccatggagcattaccccatgaccaaagagttcgataacgtg
ctcacagtcggaaatctggtgttcacagggatctttacagccgagatgtgcttcaagatc
atcgccctggatccttactactacttccaggaaggctggaacatcttcgatggcatcatc
gtcagtctcagtctgatggagctcggccttgccaacgtggaaggcctgtctgtgctcagg
tccttcaggctgctgcgggtcttcaaactggccaagtcctggccgacgctgaacatgctc
atcaagatcatcgggaactcggtcggtgccctgggcaacctgaccctggtgctggccatc
atcgtgttcatcttcgccgtggtgggcatgcagctgttcggcaagagctacaacgagtgc
gtgtgcaagatctcggaggagtgcaagctgccgcgctggcacatgcacgacttcttccac
tccttcctcatcgtgttccgggtgctgtgcggggagtggatcgagaccatgtgggactgc
atggaggtggcgggacagagcatgtgtctgatcgtcttcatgatggtcatggtcattgga
aaccttgtggttctcaatctcttcctggctcttctcctgagctcgttcagtgccgacaat
ttggcagcgaccgacgaagacagcgagatgaacaacctgcaggttgccgtgggccgtatc
cagcgaggcgtttccttcatcaagtccaccatgcggcagttcctgcagagcctgtgcttc
ggtggggcggccaagggctcgtgcctcgccgaggaaagcaaacccctggacgaactgcac
agcaacggcaagggcaactgcatttccaaccacacggctttggagatcaccaaggacgtt
tccggggtgtacaccatggagggcaatgggagacctggaggagggctggtggtgggggtt
gggatgggtggggacactccaggaaagtaccccacggaggaatgtgactatatgtcgttc
attcacaaccccagcctgacggtgacggtgcccatcgctgtgggcgagtcggactttgag
aacttgaacacagaagacttcagcagcgactcgtctgatgtggagggcagcaaggagaag
atcgatgttgaacccctgcctcggagttcctcagaggggagcacggttgacatccgaccc
ccgggagacggggaggattcagtggagctggagccggaggagtcgctggacccggaggcc
tgcttcacggagggctgtgttagcaggttccagtgctgtcagatcgacgaggagggaagc
aagttcaagagctggtggacgctcaggaagacctgcttcatcatcgtggagcacaactgg
ttcgagtccttcatcatcttcatgatcctgctgagcagcggggcgctggcatttgaggat
atttatatcgagcagcgaaagaccatcaaaaccgtgctggagtacgcagacaaggtcttc
acctacatcttcatcctggagatgctgctgaagtgggtggcctacggcttcgtcaagtac
ttcaccaacgcctggtgctggctggacttcctcatcgtggatgtgtccttagtgagcctc
gtagcaaatgccctgggctactctgagctcaccgccatcaagtccctgcggacgctgcga
gccctgcggcccctgagggccctgtcccggttcgagggcatgagggttgtggtgaacgcc
cttctgggggcgatcccctccatcatgaacgtgctcctggtgtgcctcatcttctggctc
atcttcagcatcatgggtgtcaacctgtttgcagggaagtactactactgcgtcaacacc
accacggacgagcccttccccatcgacgtggtcaacaacaggtccgactgcctgaggctg
gccaatgacagcgctcgctggaagaatgtcaagatcaactttgataacgtcggggccggg
tatctggctctgctgcaagtggcaacatttaagggttggatggacatcatgtacgcggcg
gtggactctcgaggtttggaggaccagcctgaatacgaggtcaacttgtacatgtacctt
tacttcgtgatcttcatcatcttcggctccttcttcaccctgaacctcttcatcggcgtc
atcatagacaacttcaaccagcagaagaaaaagttgggaggtcaagacatcttcatgacg
gaggaacagaagaagtactacaacgccatgaagaagctgggctccaagaaaccacagaaa
cccatcccccggccggcaaatgcgtttcaaggctgcgtgttcgacttcatcacaaagcag
gcctttgacatcgtcatcatgatcctcatctgccttaatatggtgaccatgatggtggag
acagatgaccagactaaggacatggacaatatcctgtactggatcaaccttgtcttcatc
gtcctcttcactggggagtgtgtgctcaagatgatctccctgcgttactattacttcacc
ataggctggaatatattcgactttgtggtggtgatcctgtccatcgtgggtatgttctta
tctgaagttattgagaagtactttgtgtccccaacgctgttccgggtgatccgactggca
cggataggccgcatccttcgcctcatcaaaggtgccaagggcatccgaacgctcctcttc
gccttgatgatgtccctccccgccctgttcaacatcggcctcctcctcttcctcgttatg
ttcatctatgccatcttcggcatgtccaactttgcttacgtcaagagggaggcaggcatc
gatgacatgtttaatttcgagacttttgggaacagtatgatctgtttgtttcagatcacc
acctcagctgggtgggacggcctgctggcccccatcctgaacaagagggagcccgactgt
gacagccagatggagcacccgggcaacaactacaaaggcaactgcggcaatccgtcagta
ggcattttcttctttgtcagctacatcatcatctgcttcctcatcgtggtcaacatgtac
atcgccgtcatcctagagaacttcagcgtggccacggaggaaagtgccgagcctctgagc
gaggatgattttgagatgttctacgaggtgtgggagcgcttcgaccccgacgccactcag
ttcatggagtacagcaagctctctgactttgccgatgctctggatcccccgctgcgcatg
cccaagcccaacctgatccagttgatctctatggacctgccaatggtgagcggcgagcgt
atccactgcctcgacatcttgttcgccttcactaagcgtgtgttgggcgaaggcggcgag
atggacgtgttacgtggacagatggaggaacgcttcatggcttctaatccctccaaggtg
tcttacgagccaatcaccaccaccctgcgccgcaagcaagaggaaatgtcagccataatt
atccagagggccttccggcgctacatgatccacctggccatgaagaaggcctcggctctc
tacaaggagaagctgaaggaaggcgtccgcgacccggacaaggacgtcatggtcgtcaag
ttcacagagaactccacctcggaaaagacggagatgacgccttccacagcctccccgccc
tcctacaacagcgtgaccaagtcagacaaggacaaatatgaacaagacaatagggaaaaa
gaaaacaaagggaaagacttaaaagaccggaagaaatag
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