Cololabis saira (Pacific saury): 133446038
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Entry
133446038 CDS
T09849
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133446038 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133446038 (bard1)
04121 Ubiquitin system [BR:
csai04121
]
133446038 (bard1)
03036 Chromosome and associated proteins [BR:
csai03036
]
133446038 (bard1)
03400 DNA repair and recombination proteins [BR:
csai03400
]
133446038 (bard1)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133446038 (bard1)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133446038 (bard1)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133446038 (bard1)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133446038 (bard1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_3
Ank_5
Ank_4
BRCT
BRCT_2
zf-RING_5
Ank_KRIT1
zf-C3HC4_3
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
133446038
NCBI-ProteinID:
XP_061579713
LinkDB
All DBs
Position
6:22845971..22874351
Genome browser
AA seq
807 aa
AA seq
DB search
MDNGASTSTDDWNKTKEAVANFRRLLLCSKCSNVMEEPVCLGVCEHMLCRSCAGPRAGDG
CVVCRSPAWVKDIQINRQLSSIVQLFCGLESLLNPTKQSDSLVDTQSQPEAAIFKHKKNF
KIWFSPRSRKVRCQVEQASETAVACSLSSGVTSEPQPAQRQDLSVFNFNLSSQDSPSSPE
KGNNANGKRQKQRPKKNTRRKGEQVQGVKRTTRKRTKQNMKKKNLEAINQQWGINAQEHT
SPGPEHICADGARRSSKRVSFRSPGVSSDEPQPEVPQGSANELSPACSTIRDDPSGDGVS
VLNYQTQPGQNGVNQQDKPSPNNANPNEDSRKQDKMSPSETPSKRTGVEEQNSTLEDTPK
RPRASPRGRGRGKSPSQMSPAVFTPPSLVSPKSDKSTKSSGREEMQGPSVVPLAVRESRS
KSPCSPGSSVRRHSSGSPAVMKKNHKGETPLHLAAIKGDVDAVKELLGQGADPNLKDNAG
WTPLHEACNLGYLAVVEELVSRGALLNTPGYENDSPLHDAVMNGHPAVVKLLLQLGASQN
VLNLHGKRPADYAVSPEMLEIFQEASEETQYANSRASPSPSASLSVVGECLRSGQAAVLL
ASRLSQAEQSRLARLGVLLGGRVADTFSGAVSHVVVPEGKMPTTYSSLLGLVAGCWVVKY
SWVEACLRAGKWLSEAEHEAGDGPQRSRSNRCSLLPSLFDGCFFFLLGSFKAPTKDELAK
LLREAGGQILSRQPKPDSDVTQTLSAAAYHALPGSDQALCTQYIIYDPRGSYRPAVVRRG
KVWSAPSTWLIDCIAAFQLLPVPDLQA
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggataacggtgcttccacgagtacagacgactggaataaaactaaggaggcggttgca
aactttcggcgactgctgctttgttctaaatgctcaaatgtaatggaagagcctgtgtgt
ctgggcgtgtgcgagcatatgctgtgcaggtcttgcgccggcccccgggcgggagatggc
tgcgtggtgtgtcgcagccctgcttgggtgaaggacatccaaatcaacagacaactcagc
agtattgtacagctcttctgtgggttggagtccctgctcaatcccacaaaacaatcagat
tctcttgttgacacccaaagtcaacctgaagctgccatcttcaagcacaagaagaacttt
aagatttggttcagtccccgcagtcgtaaggtgcgctgccaggtggagcaggcctcagag
actgctgtagcatgcagcctgtcgtctggggtaacatctgagccacagcctgctcaacgc
caggacctgtctgtttttaattttaacttatcctcccaagactctccctcttctcctgaa
aaaggcaacaacgcaaatggaaaaaggcagaagcagcgtcctaaaaaaaatacaagacgc
aaaggtgagcaggtgcaaggagtcaagaggacgacgcggaaacggaccaagcagaatatg
aaaaagaagaatctggaggccataaaccagcagtggggaattaatgcacaagagcacacc
tctcctggaccggagcacatctgtgctgatggtgcgagaaggtccagtaaaagggtgtct
tttcgaagccccggtgtcagctcagatgagcctcagcctgaagtgccacagggcagtgct
aatgaactcagtcctgcctgcagcacaataagagacgatccctcaggagacggcgtcagt
gtgctgaattaccaaacccagcccggtcagaacggtgtcaatcagcaggataaaccatct
ccaaacaatgccaacccaaatgaagattcaaggaagcaggacaagatgtctccctcggaa
actccctcaaaaagaaccggagtggaggagcaaaactccaccttggaagacacaccaaaa
cgaccaagagcatctccaagaggaagaggaagaggaaaatcaccgagtcagatgtctcca
gcagtctttactcctccatctttagtttcacccaagagtgataagagtaccaaaagctcg
ggacgagaggaaatgcaggggccctcagtggtaccactcgctgtaagggaaagccgcagc
aaatctccctgcagtcctggatcatcggtcagacggcacagctctggaagccccgcagtt
atgaagaagaaccacaagggagagacgccgcttcatctggctgcaataaagggagatgta
gatgctgtcaaggagctgcttggtcagggagcagaccccaacctgaaggataatgcagga
tggacacctctgcatgaagcatgtaaccttggttacctggcagttgtggaggagctggtc
tccagaggagccctcttgaacacaccgggttatgagaacgattctccacttcacgacgcg
gtgatgaatggacacccagccgtcgttaaactgctgctgcagctgggggcttcgcagaac
gttcttaatctgcatggaaagcggccagcagattatgcagtgagcccggagatgctggag
attttccaggaagcctcagaagaaacccagtatgctaattctcgtgcatctccgagcccc
tcagctagtctctccgtggtgggcgagtgtctgaggagcggtcaggccgcggtgctcttg
gccagcaggctgtcccaggcggagcagagccggctggccagactaggggtgctgctgggg
gggagggtggccgacaccttctctggcgcagtgagccacgtcgtggtgccagaaggaaag
atgcccaccacctactccagcctcctgggtcttgtcgctggctgctgggtcgtcaaatac
agctgggtggaagcgtgtctgcgggccgggaagtggctgtccgaagccgagcatgaagcg
ggcgacggcccccagcgcagtcgcagcaacagatgtagcttgctcccatcgctcttcgac
ggctgcttcttcttcctcctgggctccttcaaggcgccgaccaaagacgagctcgccaag
ctgctccgggaagccggaggtcagatcctgagccggcagcccaagccggacagtgacgtg
acacaaactctgagcgcagccgcctaccacgccctgccgggctccgaccaggcgctctgc
acccagtacatcatttatgacccccggggcagttacaggcccgcggtggtccgacgaggc
aaggtgtggtctgccccctccacctggctcatcgactgcattgcagccttccaactcctt
cctgtgcctgacctgcaggcttaa
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integrated database retrieval system
