Cololabis saira (Pacific saury): 133450382
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Entry
133450382 CDS
T09849
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133450382 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133450382 (skic3)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133450382 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_19
TPR_14
TPR_11
TPR_17
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_7
ARM_TT21_C
Fis1_TPR_C
FAT
TPR_15
Aip3p_Bud6_N
Motif
Other DBs
NCBI-GeneID:
133450382
NCBI-ProteinID:
XP_061584934
LinkDB
All DBs
Position
9:25462025..25483095
Genome browser
AA seq
1571 aa
AA seq
DB search
MSSKEVKAGLKSAREAIKNKEFKEALKHCKAVLKLEKSNYNAWVFIGLAASELEQPDQSQ
AAYKKAVEQEPEQLLAWQGLANLYEKTDQWDFKTELPNVYQKLVELYASSDKTKCYEVIK
KLSEIYQSDREYLKLAKVWLQLVQLKEEEGVDKRELVKLLQEMTQLLSDCLNEEEQNNET
QHHVITAFEKAMVLIEPIPGEEHRKLSAEYVKCLSKLPHEEAKMKVACQSMLGLYPSQSY
PLEVLCCHYLKTGSVDEDAVTCFSRLLDLAPNCGLGHLGLGTKALQEGKYKDAVNNLEQG
LKKMTSTTGWYSLAEAQFKLHRYTDSATSCSQGLNSCGREDKKLSDKLLRLKLEALVRSG
GEKAADEAFESFSQIPESEKDPALLALKGRAHLNKGQIDQAFQVSSDLIASDPNLAQGLA
LRGLVYLAKGQQQLAEESFINAVKQSPNCGEYYFLLGKLYWEMGAETRNDRSKAHTNFLK
AAKFDPQLGSAFCYLGHYYREVANDNSRAQGCYKKAFQLNSDDAESGAASVDLSMGQGDM
DTALSLLQSVIEKATPGSAKWAWMRRGLYYLKVGEHQKAIADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQRDY
VPALKGLGECQLSLAKCLQEDCRDGGAIDLIQQAIQNLFRAVQLRPDLSCLWKLLGDACT
AVSKVSPKRAQVLVPAFLVGSDSNTQGHLLNKAETLKVGERCYVRALKLMPEVPSLWYDL
GLNYYHQATSLSCPTEGDQKSPSLDLEKAQECLKKAIMMESGNHSYWNALGVISMNKGLE
NYTLAQHCFIKSIQVEPNNVVAWTNLGALYLKKDNIELAHEAFKIAQSLEPLYVSCWIGQ
ALIAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRNTELYRYNIVQMNA
ISSAHVALSKYTERIQNDPDAFIMLGYLNEHLQLNRQALQAYQRAVELLQSMSSPEKLAF
SLGSYGRALCKVDQWEEAVHIYKSTPLQELSDLVGLALAYCRAGLFPESISAYERALAVA
SSEKEKAYILTALALLQHRQGNLDAAKTLLFKCSMLKEPIPESILCLCALGLVHGEATLA
AAALTELIKQGSGSGSVVEQQCLLTCTVLALQGNYSAVQREASRAVHRHPGNPSLWVLLS
RVIPQYYPRKSNGGAVAGHVACLSSMTQGKRALLYSGVNQLAVGRHSGEDKHRNALKTMQ
RAVLLCPDDPATWAGLMAACHTEKTSCYLSGSAPRRQSLEHTLMSVVSEKVRNVEEIKRP
LAQSLEGWVLQQAVSGLMLDGQLEQAEALCTQVLNVSPEHPAVMLSLRQVQCQRLLMANG
GAILPDQILEQLNKAVMLNPTNIGAWHWLAEVHRSQGLLVQAVLAYRQSLQLASQLGVHS
CQVASLLRLALLALGPCMAGVPGNDWKDLVVEATTEVLKLGSSPMALLFQALLQCVTKMA
ARETRRLLERLVYVSSPDFPVTVVQVASWYLLRHLHAKNDEELIKVLLHHAKMNGDDRLV
EFHSLLTSSSA
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtaaagaagtgaaagccggactgaaaagtgccagggaggccataaaaaacaaa
gaattcaaagaggcactaaaacactgcaaggctgtattgaaactcgaaaagagtaattac
aatgcctgggtattcattggtttggcggccagtgaactggagcagccagatcagtcgcag
gctgcttataaaaaagcagtggagcaggagccggagcagctgctggcctggcagggccta
gcaaatctttatgaaaagactgatcagtgggatttcaaaaccgagctgcccaatgtctac
cagaagcttgttgagctgtatgcaagttcagataaaaccaaatgttatgaagtgatcaaa
aagttgtcagagatttatcagtcggacagggaatatttaaagctggcaaaggtttggctt
cagctcgtgcagctgaaagaggaagagggtgtggataagagggagttggtaaagctgttg
caagaaatgacccagctcctttcagactgtcttaatgaggaggaacagaacaatgaaacc
caacatcatgtaattacagcgtttgagaaggccatggttctcattgaacctataccagga
gaagaacacaggaagctctcagctgaatatgtaaaatgtctgtccaaactgccacacgaa
gaagcaaaaatgaaagtggcatgccagtcaatgcttggactataccccagtcaaagttat
cctcttgaggtcctctgttgccactacctgaaaacaggtagtgtggatgaggatgcagta
acctgtttctcccggctcctggatctggctcccaactgtggattaggccacttgggtttg
ggtaccaaagcgctgcaggaggggaagtataaagatgctgttaacaacctagaacaagga
ctaaagaaaatgacttcaacaacaggatggtatagtttggctgaggctcagtttaaattg
cacagatacacagatagtgctacatcatgctcccaaggtttgaattcctgtggtcgtgaa
gacaagaagctgagcgacaaactgctgagacttaaactagaagctctagtgagaagtgga
ggagagaaggctgcagatgaggcctttgagtctttttcacagattccagaaagtgaaaaa
gatccagctctattagccctgaaaggacgtgcacaccttaacaaagggcagattgatcaa
gctttccaggtctcatcagatttgatagcctctgacccaaatctggcccaggggttggca
ctgagaggactggtgtatttggctaaaggccagcagcagctggcagaggagagtttcata
aatgctgtaaagcagagcccaaactgtggagagtattatttcttgcttggaaaactctac
tgggaaatgggagcagagacccgtaatgaccggagcaaagcccatacaaacttcttaaag
gctgcaaagttcgatcctcaacttggttctgcattttgctaccttggacattattatcgg
gaggtggcaaatgataatagtcgtgcacaaggctgctataaaaaggcctttcagctgaac
agtgatgatgctgagtctggagccgcttcagttgatctcagtatggggcaaggagacatg
gacactgccttgtcacttcttcagtcagtgatagaaaaagccaccccaggctcagcgaaa
tgggcctggatgagacgaggcctgtactacctgaaagttggagaacatcaaaaggccata
gctgatttgcaggctgctttgagagcagaccctgaagactgggtgtgttgggagtgttta
ggggaggcctacctaaacaggcggagttttacagctgctctgaaggcctttggtaaggcc
catcagcttcagccgtcttccatctacagtgtctaccaagcagctgctattaagcagact
ctgggcaagttcaaagaggcagttgcagagtacctgcaaatcacagcacagcgggactat
gttcctgctcttaaaggcttaggggagtgccagctttctctggcaaagtgtttgcaggag
gactgcagagatggaggagccattgacctcatccagcaagcaatccaaaatctcttcaga
gccgtgcaactgcgaccagacctgtcttgtttatggaagctgctgggagacgcctgtact
gcagtgagcaaagtttcaccaaaaagagcccaggttctggtcccagccttcctggttgga
tctgactccaacactcagggtcatttactgaacaaggctgagacgctcaaagttggtgag
aggtgctatgttcgtgctttgaagctgatgcctgaggtcccaagcctttggtatgacctg
ggactcaactactaccaccaggcaaccagcctatcttgccccacagaaggagaccagaaa
tccccatctctggacctagaaaaggcccaggagtgtttgaaaaaggccatcatgatggag
agtgggaatcatagctactggaatgccctgggtgtgatttcaatgaacaaaggtctggag
aactatactctggctcaacattgcttcatcaagtccatacaagttgagccaaataatgtt
gttgcatggacaaacctaggtgccctgtatttgaagaaggacaatattgagcttgcgcat
gaggcctttaagatagctcagtctttggagccgctatatgtcagctgctggattggacag
gcgctgatagcagaacgcgtaggaagctatgacaccatggaccttttcaggcacaccact
gagctcagtacacatatggagggagtgaaagggtacgcctactgggtttgttcaaccctt
ctggataagagcaacagaaacacagaactgtaccgctacaacattgtacagatgaacgcc
atctcttctgctcatgtggcacttagcaaatacacagagagaatccagaatgaccctgat
gccttcattatgctgggctatcttaatgagcatctgcagctgaatcggcaggccttacaa
gcataccaaagagcggttgaactgcttcagtccatgtcctctccagaaaagctggccttt
tctcttgggagctatggccgtgctttatgcaaggtagaccaatgggaggaggcggtgcat
atttataagtctactccactgcaggagctcagtgaccttgttgggctcgctctggcttac
tgcagggcagggctcttccctgaaagtatcagtgcctatgagcgtgccttagctgtggct
tccagtgagaaggagaaggcttatatattgactgctctggctctgctgcagcacaggcag
ggcaacctagatgcagctaagactctgctttttaaatgctcgatgttgaaggagccaatc
ccagagtcaattctgtgtttatgtgctctgggtttggtccatggcgaagctactctagca
gctgccgcccttactgagctcataaagcaaggttcagggtccgggagcgtcgtggaacag
cagtgtctactcacctgcacagtgctggccctgcagggaaattacagtgcagtacaacga
gaagcctccagagctgtacacagacatcctggaaacccatccctttgggtccttctgtcc
agagtgataccccagtactacccaagaaaatcaaatggtggtgcagtagctggtcacgtc
gcttgtctttctagtatgacccaaggaaagagggcattgttgtacagtggagtaaaccaa
ctggctgtcgggagacactctggagaggacaagcacaggaatgcactgaagaccatgcaa
agagctgtgctgctctgtcctgatgatccggctacatgggcgggcttaatggctgcctgt
cacactgagaaaacgtcctgctatctctctggttctgctcctcgccgacagtcactggag
cacaccctgatgtcagtggtttccgagaaagtgcgcaatgtagaggagataaagcgacct
ctggctcagtctctggaaggatgggtactgcaacaagctgtgtctggtctcatgctcgat
ggacagctggagcaggcggaggccctctgcacacaggttctgaatgtgtctcctgagcac
ccggcagtgatgctttctctgagacaagtgcagtgtcagcgactcctcatggctaacggt
ggtgccatcctccccgaccaaatactggagcagctcaacaaagccgtgatgttgaacccc
accaacattggggcatggcactggctggctgaggtgcatcgcagccaaggcctgctggtc
caggcagttctggcgtacagacagagtctgcagctcgcctcacagctgggtgtgcacagc
tgccaggtagccagcctgctccggcttgcactgctcgctctaggaccttgtatggcaggt
gtcccaggaaacgactggaaagacctggtggtggaagccactactgaggttttgaagctg
ggttcatctcccatggccctacttttccaggccctgctccagtgtgtgaccaagatggct
gccagggaaacaaggcgtttgctggagaggctggtttacgtttcatctccagacttcccc
gtgactgtggtgcaggtggccagttggtacctcctcagacatctgcatgccaaaaatgac
gaggagctcatcaaagtccttttgcatcatgccaaaatgaatggagatgacagactggtg
gagtttcattcactgcttacttcatcttcagcctga
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integrated database retrieval system
