Camelina sativa (false flax): 104702434
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Entry
104702434 CDS
T05044
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X2
KO
K12600
superkiller protein 3
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104702434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104702434
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
104702434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_11
TPR_8
TPR_14
TPR_16
TPR_7
TPR_CcmH_CycH
TPR_19
TPR_9
TPR_12
TPR_20
BTAD
TPR_NPHP3
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
104702434
NCBI-ProteinID:
XP_010416588
UniProt:
A0ABM0SV52
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All DBs
Position
7:24804234..24811395
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AA seq
1168 aa
AA seq
DB search
MELEQLKKSVEANPDDSSLQFELGLYLWDNVGESEQAAERFVLSAKLNPNNAAAFKYLGH
YYSRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASERSPKA
FWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTLSDLWEALGLAYQRLGMFTAAIKAYGR
AIELDETKIFTLVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKEC
INLGAFGWAASLLEDARKAAKETSELSSNMSCIWKLYGDIQLTYARCFPWSAGTENSDFT
LKTFSDSILSWKSICYSAALSAKACYQRALHLAPWQANVYTDIAITCDLVSSLSNDSETS
SSWKLPEKMALGALLLECENSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQ
IFRESDEMKLAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAE
FQVGLAWLALLQGNISSPQIFACIEQAVQRTPYYPESHNLHGLVCEARNNYHTAIASYRL
ALSAMSIYPDNSVKSHAGKVSMNLVRSLSKAGRFKESVMECTNLKSKGLLDAGGLQIYAF
SLWKIGENDSALSVIRDLGARISTMEKPSIASPISFICSLLYCISGVDSAITSIQKMPKD
FFQSSKISFIVSAIHSLDQSDRLQSIVASTRNYITSQEEIVAMHYLIALNKLLKTGAGDF
LGFEKGIAHLRKVIHMYPHSNLIRNLLGYILLAGEGMKDACTASRCCIINVSDCVNKEGL
KSALEVLGGGSVACNVIGNIAPRFSFPTCHCQCLNAPVVVVELQRFLHQEPWNSGIRYLL
ILNLVQKAREQRFPRQLCSAIERLISVALSDETCSKEGEYQKFQLLLCASEISLQKGNIA
ESIANARKASSLSLPSSYLFLGHLQLCRAYAIKGSTRSMQEEYRACLELKTDLNIGWICL
KLIESQYDLEPDANFLEMSLQECSSQKKNSWKEWMGVYSLARGLDSVGKKDFFLAEEFLA
QACSLFNSESCLLLCYGAVCMELARQSNDSQFLSLAVKSLSKVQASSLFPLPIVYILLAQ
AHGSLGSKEKWEKNLRLEWLCWPPEMRPAEVYFQMHILARQSEDRPETASGIENYQSPEK
WVTRAIHTDPSCLRYWKVLDKLVQHPMS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggaattggagcaacttaagaagtctgtagaggcgaacccagatgattcttctctacag
ttcgaactcggtttgtatctgtgggataatgttggagaatcggagcaagcggcggagcgt
tttgtgttgtcggcgaagttgaacccgaataatgccgcggcgtttaagtatctagggcat
tactactcgcgtgtgacgcttgatctcaaccgagctgctaagtgttatcaaagagcagtg
ttgataaaccctaatgattctgattccggagaagctttgtgcgatttgtttgacagacaa
gggaaagaaatcttggagattgctgtttgccgtgacgcttctgagaggtctcctaaggct
ttttgggcgttttgtagattgggttacattcagcttcatcagaagaagtggtctgaagct
gttcagagccttcaacatgcaattagaggttatcctaccttgtcagacttgtgggaagct
ctaggcctggcttaccagcgacttggaatgtttactgctgctatcaaggcgtatggccgc
gccattgaattagatgagaccaagatttttacattagtggaaagtgcaaatatctttttg
atgcttggttcatatagaaagggtgtggagctatttgagcaagcgttgaagatttcacct
cagaatatttcggtgctttatggtcttgcttctggattgcttagttggtcaaaggaatgt
ataaatttgggcgcatttggatgggcagcttcgttgttggaggatgctcgtaaagctgca
aaagaaactagtgaactgtccagcaacatgtcttgtatttggaaattgtatggagatatt
cagcttacatatgcaagatgctttccatggtctgctggaactgaaaactcagatttcacg
ttaaaaacatttagtgattcaatcctttcttggaaaagcatttgttactcagctgcattg
tcagccaaagcttgttaccagcgagctctacacttagccccttggcaagctaatgtatat
accgacatagccataacttgtgatcttgtttcaagtttaagcaatgactctgaaacttca
agttcttggaagctaccagaaaagatggctctgggagcattactgcttgaatgcgaaaac
tcagagttctgggttgctttgggttgtatgtctgataatagtgctttgaaactacatgct
ttgatccgggcattgcatttggatgtatctttagccgttgcttgggcttttatgggtcag
atcttcagggaatcggacgaaatgaaattggcaaagcaggcttttgattgtgctagaagc
atagatcctacacttgcgctaccttgggctggctcagctgatacttatgcgagggagtca
acatcagacgaggctttcgagagttgtttacgagctgcacagatatcacctcttgcggag
ttccaggttggtctggcatggcttgctttgctacagggaaatatatcatctccgcagatt
tttgcttgcattgagcaggcagtgcagcgcaccccttattaccctgaatcccataatctc
cacgggctagtttgtgaggcaagaaataattatcacactgccattgcttcttataggctg
gcactatctgcaatgagtatttaccccgacaattcagtgaaatctcatgctggaaaagta
tctatgaacttggtcaggtcactcagcaaggcaggacgattcaaagaatctgttatggaa
tgcacaaatttgaagtcaaaaggtttgcttgatgccggaggtttgcaaatatatgctttc
tctctgtggaagattggtgagaatgattcggctctctcagtgattcgagatctgggggct
aggatatctaccatggaaaaaccctcaatagcctccccaatcagttttatctgtagtctg
ctctattgcatatctggggttgattctgctataaccagcatccagaaaatgccaaaggat
ttcttccagagttcgaaaatcagctttatagtatctgccatccattctcttgatcagagt
gatagacttcagtcgattgttgcaagcactcgtaactatattacatcacaagaagaaata
gttgcaatgcactatttgatcgcactcaacaaattgctgaaaactggagcaggagatttc
cttggatttgagaaggggattgcccacctccgaaaagttattcatatgtaccctcatagt
aatttgataaggaatctgcttggatatattttgttagctggtgaaggaatgaaggatgcc
tgtactgctagtagatgttgtatcataaatgtctctgactgtgtaaataaggaaggtctg
aagtccgcattggaggtccttggtggaggatcggttgcttgcaatgtaattggcaatata
gctccaaggttctcatttccgacatgccattgtcagtgtctgaatgctcctgttgttgtt
gtggaactgcaaagattcttgcatcaagaaccttggaacagcggtataagatacttgctt
attctgaatctcgtgcagaaggcacgtgagcagagatttcctcgccaactttgtagtgct
attgagcgtctaatctctgtggcactctctgatgagacatgttcgaaggaaggcgaatat
caaaagttccagcttctgctttgtgcttctgagatcagtttgcagaagggaaatatagca
gagtccattgccaatgctcgaaaagcttcttccctttcgcttccaagtagctacttattt
ctaggacatttgcaactttgccgtgcctatgcaataaaagggagtaccagaagcatgcaa
gaggaatacagagcgtgtttggagctcaagactgacttaaatattggttggatatgcctg
aagctcatagaatctcaatatgatctggaacctgatgctaacttcttagagatgagccta
caagaatgctcgagccagaagaagaattcatggaaagaatggatgggtgtatatagttta
gctcgtggcttagattccgtcgggaaaaaagactttttcttagcagaggaattccttgca
caagcttgttcgttgtttaattcagagagctgtctacttctctgctatggtgctgtctgc
atggagctggctagacagtctaatgactcgcagttcctctcactggctgtaaaaagtctt
agcaaagttcaagcgagttcgttgtttcctttgcctatcgtgtatatattattagctcaa
gcacacggtagtcttggctctaaagagaaatgggagaagaatcttcgtcttgaatggtta
tgctggccaccagaaatgagacctgctgaggtttacttccagatgcatatactcgcaaga
caatcagaagacagacctgaaacggcttcagggattgaaaactaccaaagccctgagaaa
tgggtgactagggcgattcacacagacccttcttgtctgagatattggaaggtcttggat
aagcttgttcaacatcccatgagctga
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