Camelina sativa (false flax): 104732207
Help
Entry
104732207 CDS
T05044
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat00040
Pentose and glucuronate interconversions
csat01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
104732207
Enzymes [BR:
csat01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
104732207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
104732207
NCBI-ProteinID:
XP_010450046
UniProt:
A0ABM0V329
LinkDB
All DBs
Position
2:21948117..21949937
Genome browser
AA seq
387 aa
AA seq
DB search
MSIVLTIFLFFLNVSYAFAFAVPKPPIVRQLSTSVPSNSTESSCSSANGNVIDECWRCDE
KWKDNRRNLADCAVGFGRDAIGGRAGEYYTVTDSGDDNPLNPSPGTLRYGATQDQPLWII
FDRDMVIKLKQDLQVASYKTIDGRGNNVQIGYGPCLTLYKVSNIIINNLYIHDCVPTTLG
GYSDGDGISIFESRDIWIDHCTLERCYDGLIDAVNGSTDITISNNYMLNHNEVMLLGHSD
EFSGDQDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYREWKMYAIGGSANPTIFSQG
NVFIASDNQFTKEVTKRESVNGDDEWMEWNWKSEGDEMVNGAFFTPSGNEDSPTYAKMSS
IVARPASLLKAIHPSVGVLSCVTDQPC
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattgtattaacaattttcttatttttcttaaacgtttcttatgcgtttgccttt
gctgttcctaaaccgccaatcgttaggcaactatcaacatcagtgccgtcaaactcaaca
gagtcttcttgctcatcagcaaatggaaatgtaatcgacgagtgctggagatgcgacgag
aagtggaaggacaaccgcagaaacctcgcggattgcgcggttggattcggacgcgatgca
ataggcggtagagctggcgagtactacacggtaactgattcaggagacgacaatcctcta
aacccatctccaggtacgctacggtacggtgcaacacaagatcaacctctatggattatt
tttgatcgagacatggtaattaaactaaaacaagatctccaagtagcatcgtataaaacc
attgacggtagaggaaacaacgtgcaaataggttacgggccgtgtttaactttatataaa
gttagtaatataattataaacaatctttatatacacgattgtgtacctactacgttggga
ggatactcggatggagatgggatctcgatattcgagtctcgggatatttggattgatcat
tgtacgttagagagatgttacgatgggcttattgatgcggtgaatggatccacggatata
acgatttcgaataattacatgttgaatcataatgaagtcatgcttttgggtcatagtgat
gagttttcgggtgatcaggatatgcgagttacgatcgcctttaactattttggtgaagga
cttgtccagagaatgccgaggtgcaggcatggatattttcacatagtgaataacatttat
agggagtggaagatgtatgctattggtggaagtgctaatccaaccatctttagccaagga
aatgttttcatagcttcagataatcagttcaccaaggaggttacaaagcgagagagtgta
aatggagacgatgaatggatggaatggaattggaaatcagaaggagatgaaatggttaac
ggcgctttctttacaccgtcagggaacgaggattctccaacctatgcgaaaatgtcgagt
atagtagctcgaccagcttcacttctcaaggccatacatccatcagtaggtgttcttagt
tgcgtaactgaccaaccttgttaa
DBGET
integrated database retrieval system