Camelina sativa (false flax): 104754361
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Entry
104754361 CDS
T05044
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104754361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104754361
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104754361
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104754361
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not1
ARM_Cnot1
NOT1_connector
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
104754361
NCBI-ProteinID:
XP_010474838
UniProt:
A0ABM0WQS5
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Position
17:699936..705051
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AA seq
853 aa
AA seq
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MDMVSRPSDISVDGFESSVSLLSSQVDPAGDSASLQFAKSLPTSELNLVEPSDGAMKEIG
TSLQTLTSAATMERVGGNNITQPSLSTRDALDKYQIVTQKMEELVANNAGDDEIQAVVSE
VPEIILRCISRDEAAFAVAQKAFKALYENASSNLHVSANLAILVAIRDVCKRVVKELTSW
VIYSEEERKLNKDITIGLIQRELLSLAEYNVHMAKHLDGGRNKSATDFAISLLQSLVTEE
SSVISELHSLVDALAKLASKSGSPESLQQLIDIIRNPVTNSAGLSDSATGNEYNDRQKDE
KVACNTTSNTDVNTSLDYVESDPAGFRDRVSTLFESWYQICELPGANETACSQYVLHLHQ
TGFLKGDDTTESFFRTLLEISVAHCISSEDISSGAVQSPQQAQSPSFLAIDMYAKLVFSI
LKYFPEQESSSKLFLLSEIMAVTVRCIQKDAEDKKTSLNPKPYFRLFINWLLDLCSLDPG
TDGANFQVLTAFANTFHALQPLKIPAFSFAWLELVSHRSFMPKLLTVNGQKGWPYVQRLL
VDLLQFLEPFLRNAELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQM
RNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAALKGKQMKNDVDEYLMSR
QQNSTFLSELKQKLLLSSSEATSAGTRYSVPLINSLVLYTGMQAIQQLQAGETQAQNVVA
LQMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESDQEIIQEQITRV
LLERLIVNRPHPWGLLITFIELIKNPRYGFWKQAFIRCAPEIEKLFESVARSCGGLKPVD
EGMVSGWVSDNSH
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggatatggtctcccggccatcagatatttctgtggatggttttgaatcttcagtctcg
cttttgagctcacaagttgatccagctggtgactcagccagtcttcaatttgctaaatca
ctaccaacctcagaattgaatctggttgaaccctctgacggtgctatgaaagaaattgga
acgtcactgcagacattgacttcagctgctaccatggaacgagttggtggaaataatatt
acacagccttctctgtccacgagagatgcactggataagtatcagattgttactcagaag
atggaggaattagtggctaataatgcaggagatgatgaaattcaggccgtagtttctgaa
gttcctgaaattatcctcagatgtataagcagagatgaagccgcttttgctgtcgctcaa
aaagctttcaaggctctttatgagaatgcatcaagtaaccttcacgtcagtgctaaccta
gcaatacttgtggctattcgtgatgtttgcaagcgtgtcgttaaagagctcactagttgg
gtgatttattcagaggaggagcggaagcttaacaaagacattactattggtcttattcaa
cgcgagttgctcagcctagcggagtacaatgtccacatggcgaagcatcttgatggaggg
agaaacaagagcgcaactgactttgctatttctctactccaatccttggtcactgaagag
tccagtgtcatttcagagctccacagtcttgttgatgcgctggcaaagcttgcctcaaaa
tccggatctcctgagtcgttgcaacagttaattgacatcatacgaaatccagttactaac
tcagctggcctctctgatagtgcaaccggaaatgagtacaatgataggcaaaaggatgaa
aaggttgcgtgcaataccacttctaacacagatgtgaataccagcttggattatgtggaa
tcagatcctgcgggcttccgggatcgggtgtccacgctttttgaaagctggtatcaaatc
tgcgaacttccgggtgcaaatgaaactgcttgttcacaatatgtccttcacttgcatcag
actggattcctcaagggtgatgatacgacagagagttttttccgaactcttctggaaatt
tctgttgctcattgtatatcttctgaagatataagttctggtgctgtgcaatctcctcag
caagctcagagtccatcattcctcgccatcgatatgtatgcaaagcttgttttttcaatc
ttgaagtatttccctgagcaggagtccagcagcaagttatttcttctttcggagatcatg
gctgtcactgtgagatgtatacaaaaggacgctgaagataaaaagacatcactcaatcca
aaaccatattttcgattgttcatcaactggctgctggacttatgttccttggatcctggg
actgatggtgcaaactttcaggttctcacagcttttgccaacacattccacgcgttgcag
cctcttaagattcctgctttcagctttgcatggctagagcttgtcagccacagaagcttc
atgcccaaactacttacagtaaatggccagaagggttggccatatgttcaacgcctgctg
gtggacttgctccagtttcttgagccatttttaagaaatgctgaactcggagtaccagtt
catttcctatacaaagggacattgagagtgttgctggtgctgcttcatgacttcccagaa
tttctctgtgattatcattttactttctgtgatgtgattccttcaagttgcatacaaatg
cggaatattattctcagttcttttccacggaacatgaggcttccagatccttctaccccg
aacttaaagattgatttgttgcctgagattgtagaagctccctgtatcctttccgaggtt
gatgctgcgctaaaaggaaagcaaatgaaaaatgacgtggatgagtatcttatgtcgagg
caacagaattcaactttccttagtgagctgaaacagaagttacttctctcgtcaagcgag
gctacttcagctggaacacgttacagtgtaccattgatcaactcgcttgtgctatatact
ggaatgcaggctattcagcagctacaggcgggtgagacacaggctcaaaatgttgtggcc
ttacagatgtttaagtatttaagtatggaacttgatacggaaggacgttatctgttcctt
aatgccattgctaaccagcttcgatatcccaacaaccacacacattacttttccttcatc
atgctctatctcttcttcgaatctgaccaggagatcatacaggaacaaataacaagagtg
ctgttggaaaggctcattgtgaaccgaccacatccatggggcctcctaatcacattcatt
gagctcatcaagaatccaagatatggcttctggaaacaagccttcattaggtgtgcgcct
gagattgagaaactctttgaatctgtagccagatcctgtggtggcctcaagcctgtagac
gagggaatggtctctggttgggtctcagacaattctcattag
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