Camelina sativa (false flax): 104758274
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Entry
104758274 CDS
T05044
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X3
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104758274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104758274
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104758274
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104758274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
DMPK_coil
Motif
Other DBs
NCBI-GeneID:
104758274
NCBI-ProteinID:
XP_010479417
UniProt:
A0ABM0X1Z5
LinkDB
All DBs
Position
3:complement(45434..59580)
Genome browser
AA seq
2380 aa
AA seq
DB search
MLMIPSKVAGHTRFLLQSLHDSDADSIAKELSQLFDFGVETSIPVLKTCLDCFTVRKSQP
DTLLQLEKVVSLVFKRVMKLPNLGTLLSHALKDVELTQSFLDDLTDTLEFSVSDKIAFAL
ALTVFDRLDAKTTGRNFLLAEIEQLCANTGQIDSSEQIQNVLLFLQSSEDLSRHLDSFLQ
ILSYAQPSDDFSFALTPILSDVHEADVFRSMGFHCDSAENEFDAILAEIDKETGVGDLMG
ELGCGFTADAQQCKEILSSFAPLREATISRILVNVARTCADLEDNHTTFSTFSLALGSCI
PSEPPTPKSWNVDILVDTINLLAPGTSWRKVIENLDHDGFDIPNMECFAFFMRLYKTACK
EPFPLDAVCASVWKNMEGQLSFLKHAISAPPEVFTFMHSPRKLVYNDNMHSHEQQLGLSN
HAWLSLDLLDVLCQLAERGHAVLVSSLLQYPLTHCPRTLLLGMTHIKTAYNLIQREVVSA
IFPVIITNSQESGFILNIWHQNAELFLWGILGAQNLKADSMLRIIEICHELKILPVVLES
VPVSFSIRLAVLASLRGLLDIESWLPNCLHVFKDLFAEECLKFVKNVHFSDSEDFTAKHF
HPSDPLSDLHLDATTSLLKVLKAHDNVITSSQLVEEIEKVNAAILDCNSKLQNGEAKDSS
ASNAYGDDVEAEANAYFHQMFSSQLSVDAMVQMLSRYKDSLVQREKLIFECMIANLFEEY
RFFPKYPERQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALE
QFVNRLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPAPSQSS
PGNGELSGSSTGQSALQHSSPIQLQQQNEVHIDDRSNVLPSNDARPLLPSLSTTSADVSV
IPRNPGISTSSSTSSGLGRQTRGATSTRFGSALNIETLVAAAERRENAIETPLQNVQDKV
SFIINNLSIANIESKGKEFADILPQQYYPWFAQYMVMKRASIEQNFHDLYLKFLDKVDSK
LLFKEILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKS
LIVEAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKF
DIEVLFKNLGVDIKEVAPTSLLKDRKREIDGNPDFSNKDLISQPQMISEPKTVSPLKQID
LPLDVANSPNTDVPSKLLSQYVAPQRVYPNTLMEEEKVATLGLSDQLPSPQGLFQSTPSP
LFSISQLSAALPNIGNHVVINQKLSGFGMHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIA
CQTTKELVLKDYSMEPEESRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGL
NIANESLEQIVQLVTNDNLDLGCAAIEHAATDKAIQTIDADIAQQLLLRRKHRDGAGSSF
FDPNMLSQNSVSFIPESLRPKPGHLSLSQQRVYEDFVQHPWQKQSTQTSHGLSAASSSSS
DVALGSGYGPVSGKVASDFLSSAGNARMDMVSRPSDISVDGFESSVSLLSPQVDPAGDSA
SLQFAKSLPTSELNLVEPSDAAMKEIGTSLQTLTSAATMERVGGTNITQPSLSTRDALDK
YQIVTQKMEELVANNAGDDEIQAVVSEVPEIILRCISRDEAAFAVAQKAFKALYENASSN
LHVSANLAILVAIRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLSLAEYNVHM
AKHLDGGRNKSATDFAISLLQSLVTEESSVISELHSLVDALAKLASKSGSPESLQQLIDI
IRNPVTNSAGLSDSATGNEYNDRQKDEKVACNTTSNTDVNTSLDYVESDPAGFRDRVSTL
FESWYQICELPGANETACSQYVLHLHQTGLLKGDDTTESFFRTLLEISVAHCISSEEISS
GAVQSPQQAQSPSFLAIDMYAKLVFSILKYFPEQEYNSKLFLLSEIMAVTVRCIQKDAED
KKTSLNPKPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANTFHALQPLKIPAFSFAWLE
LVSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLV
LLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEA
PCILSEVDAALKGKQMKNDVDEYLMSRQQNSTFLSELKQKLLLSSSEATSAGTRYSVPLI
NSLVLYTGMQAIQQLQAGETQAQNVVALQMFKYLSMKLDTEGRYLFLNAIANQLRYPNNH
THYFSFIMLYLFFESDQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKQ
AFIRCAPEIEKLFESVARSCGGLKPVDEGMVSGWVSDNSH
NT seq
7143 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgattccttccaaggtcgccggtcatacccggttcttgctccagagccttcat
gattccgatgccgactccatcgccaaagagctttctcagttgtttgattttggagtggag
actagtattccagttctcaagacctgcttagattgcttcaccgtccggaaaagccagcca
gatacgctgttacagcttgagaaagtagtatccttagtgtttaaacgtgtgatgaaattg
ccgaatcttggaaccctgctctctcacgccctgaaagatgttgagcttactcagtcattt
ctggatgatttgactgatactttggaattttcagtctctgacaaaattgcctttgctctg
gccctcaccgtttttgatagattggatgcaaagacaactggacgcaactttttattggcc
gagattgagcaactctgtgccaataccggccagattgattcatctgagcaaattcagaat
gttctcttgtttctccagagttctgaggatctttccaggcatttggattccttcttacag
attttgtcttatgctcaacctagtgatgatttctcttttgctctcacacctatcctctcc
gacgttcatgaagctgatgttttcaggagcatgggttttcactgtgattctgctgaaaac
gagtttgatgctatcttagctgaaatcgataaggaaacaggtgttggagatctcatggga
gaattaggttgtggattcactgctgatgcccaacaatgcaaagagatcttgtctagtttt
gcaccgttaagagaggctactatctcaagaattcttgtcaatgttgctcggacatgtgct
gatcttgaagataatcacaccaccttttcaacattcagtttagcccttggttcctgcatt
ccatctgagcctcccacgccaaagtcgtggaatgttgatattctagttgatacaatcaat
ctgcttgctcctggcacaagctggaggaaagtaatcgagaatcttgatcatgatggattt
gacatccctaatatggagtgtttcgcgtttttcatgcggctctataaaaccgcttgcaag
gagccatttcctcttgatgctgtatgtgcgtctgtctggaagaatatggaaggtcaatta
tcctttcttaagcatgcaatatctgccccaccagaagttttcacctttatgcattctcca
aggaagctggtatataatgataacatgcacagccatgagcaacagttaggactatccaat
catgcatggctgtcgctggatctcttggatgttctatgccaattggccgagagaggtcat
gctgttttggttagttcgttgctccagtatccactcacacattgtcctagaaccttgctt
cttggaatgacacacatcaaaactgcttataatctcatccagcgagaagtggtttctgct
atttttccagtcataataacgaattcccaggagagtggttttatccttaatatctggcat
cagaatgcagaactctttctgtgggggattttaggtgcccaaaatcttaaagcagacagc
atgctccgaataattgaaatctgccatgagctaaagattctccctgttgtcttagaatca
gttccagtctcgttcagtatcagattggcagtccttgcatcattgagaggtcttttggac
attgagagctggttgccaaactgcctacatgtgtttaaggacctctttgctgaggagtgt
ctcaaatttgtcaagaatgtgcatttcagcgactcagaggattttaccgccaaacatttt
cacccttctgatccgttatcagatcttcatctggatgcaacaacttctcttttgaaagtt
ttgaaagctcatgataatgtgattacttcatctcaactggtcgaggagatagaaaaggtc
aatgccgcaattttggattgtaattcgaaactgcagaatggcgaggctaaagattcatca
gcttccaatgcatatggagatgatgttgaggcagaagcaaacgcttatttccatcaaatg
ttttctagtcagttgagtgttgatgcgatggttcaaatgctttctcgatacaaggactct
ttagttcaaagggaaaaattaatttttgaatgcatgatcgctaatctgtttgaagaatat
cgttttttccccaagtatcctgagagacagctgaaaatagcctccatcctctttggttct
gttataaagcaccagcttataagttccctcactctggggatggccctgcgtctagtcttg
gattctttgcgtaaacctgcagattcaaaaatgtttctctttggaagcaaggctctagaa
cagttcgtgaaccgtctggttgaattgcctcaatactgcaaccatattctgcaaatatcg
catctgcgtagcactcaccctgagttagtcactgttattgaacaagcactttcaaggata
tcatctggtaatttagagtccgatgcctctgtttcacaccctgctccctcgcagtcttcc
cctggaaatggcgagttgagtggttctagcactggccaatctgcattacagcattcttct
cccatacagcttcaacagcaaaatgaagtgcatattgatgaccgcagcaatgtgctgcca
tctaatgacgcaaggccacttctgccatcgttatcaaccacttcggctgatgtttctgtc
attccaaggaatcctggcatttcaacgtcttcttcaacctcatctggtcttggtcgtcaa
actcgtggagctacttcgacaaggtttgggtctgctttgaacatagaaaccttggttgca
gcagctgaaagaagagaaaacgcaatcgagactccactgcagaatgttcaggataaagtt
tctttcataatcaataatctctctatagcaaacattgaatcgaaagggaaagagtttgct
gatattttacctcaacagtattatccttggtttgcacagtacatggttatgaaaagagcg
agcatcgagcaaaattttcatgatctgtacctgaagttcttggataaagttgattcgaag
ttgttatttaaggagatacttcaaaatacttatgaaaattgcaaggttcttttgggttca
gagctcataaagtcaagttctgaagagcgatctcttcttaaaaatttaggcagttggctt
ggaaagttgaccattggaaggaattatgttttaagagcgcgagaaatagatccaaaatcc
ttgattgtggaggcatatgaaaaagggttgatgattgcggtcattccatttacttcaaag
gttctggagccatgccaaaacagtattgcgtatcagccgcccaatccttggacgatggct
atacttgggttgctcgctgagatttattcaatgccaaacctaaaaatgaatctgaagttt
gacatagaggttttattcaagaaccttggcgttgatataaaagaagtagcgccaacttcc
cttctaaaggaccggaagagagaaatagatgggaatcctgattttagtaacaaagatctt
atctctcagccgcagatgatatcagagcctaaaacagtttctcctcttaagcaaatagac
ctacctcttgatgttgcaaattctccgaatacagacgttccctcgaagttattatcacag
tatgtagcccctcaacgtgtttatcctaatactttgatggaagaggaaaaagtggcaact
ctaggtttgtctgatcagctgccgtcacctcaaggactgttccagtcaactccgtccccg
ttgttttctatcagtcagttgtcagcagcacttcccaacattggaaatcatgttgttatt
aatcagaagttgagcggatttggtatgcactttccatttcagagagtggtaccacttgcc
atggacagagctatcaaggagattgtgtctggtattgtgcagcgaagtgtttgtattgca
tgccaaacaacaaaagaacttgtgctgaaggattattccatggaacccgaagaatcacgt
atttataatgcagctcacttgatggttgcgagtttagctgggagtttggctcatgtgaca
tgcaaggaacccttgcgtacttcaatatccggtcatctacggaattctctccagggtctg
aatattgcaaatgaatctcttgaacaaattgtgcaacttgtcaccaatgacaatcttgat
ttgggttgtgcggctattgaacatgcggctacagataaggcaatacaaacaattgatgcg
gatattgctcagcaattgttgttacggagaaagcatagagatggtgctggatcctccttt
tttgatccaaatatgctatcgcagaattccgttagtttcattcccgaatccctccgtcca
aaacctggacacctctctctgtctcagcagcgagtttatgaggactttgttcaacatcct
tggcaaaagcagtcgacccagacttcacacggtttatctgctgcatcaagctcatctagc
gatgttgcacttggtagtggttatggtccagtatcaggaaaagttgcttctgactttttg
tctagtgctggaaatgctaggatggatatggtctcccggccatcagatatttctgtggat
ggttttgaatcttcagtctcgcttttgagcccacaagttgatccagctggtgactcagcc
agtcttcaatttgctaaatcactgccaacctcagaattgaatctggttgaaccctctgat
gctgctatgaaagaaattggaacgtcactgcagacactgacttcagctgctaccatggaa
cgagttggtggaactaatattacacagccttctctgtccacgagagatgcactggataag
tatcagattgttactcagaagatggaggaactagtggctaataatgcaggagatgatgaa
attcaggccgtagtttctgaagttcctgaaattatcctcagatgtataagcagagatgaa
gccgcttttgctgtcgctcaaaaagctttcaaggctctttatgagaatgcatcaagtaac
cttcatgtcagtgctaacctagcaatacttgttgctattcgtgatgtttgcaagcgtgtc
gttaaagagctcactagttgggtgatttattcagaggaggagcggaagcttaacaaagac
attactattggtcttattcaacgcgagttgctcagcctagcggagtacaatgtccacatg
gcgaagcatcttgatggagggagaaacaagagcgcaactgactttgctatttctctactc
caatccttggtcactgaagagtccagtgtcatttcagagctccacagtcttgttgatgcg
ctggcaaagcttgcctcaaaatccggatctcctgagtcgttgcaacagttaattgacatc
atacgaaatccagttactaactcagctggcctctctgatagtgcaaccggaaatgagtac
aatgataggcaaaaggatgaaaaggttgcgtgcaataccacttctaacacagatgtgaat
accagcttggattatgtggaatcagatcctgcgggattccgggatcgggtgtccacgctt
tttgaaagctggtatcaaatctgcgaactaccgggtgcaaatgaaactgcttgttcacaa
tatgtccttcacttgcatcagactggattactcaagggagatgatacgacagagagtttt
ttccgaactcttctggaaatttctgttgctcattgtatatcttcagaagaaataagttct
ggtgctgtgcaatctcctcagcaagctcagagtccatcattcctcgccatcgatatgtat
gcaaagcttgttttttcaatcttgaagtatttccctgagcaggagtacaacagcaagttg
tttcttctttcggagatcatggctgtcactgtgagatgtatacaaaaggacgcagaagat
aaaaagacatcactcaatccaaaaccatattttcgattgttcatcaactggctgctggac
ttatgttccttggatcctgggactgatggtgcaaactttcaggttctcacagcttttgcc
aacacatttcacgcgttgcagcctcttaagattcctgctttcagctttgcatggctagag
cttgtcagccacagaagcttcatgcccaaactacttacagtaaatggccagaagggttgg
ccatatgttcaacgcctgctggtggacttgcttcagtttcttgagccatttttaagaaat
gctgaactcggaggaccagttcatttcctatacaaagggacattgagagtgttactggtg
ctgcttcatgacttcccagaatttctctgtgattatcattttactttctgtgatgtgatt
ccttcaagttgcatacaaatgcggaatattattctcagttcttttccacggaacatgagg
cttccagatccttctaccccaaacttaaagattgatttgttgcctgagattgtagaagct
ccctgtatcctttccgaggttgatgctgcgctaaaaggaaagcaaatgaaaaatgacgtg
gatgagtatcttatgtcgaggcaacagaattcaactttccttagtgagctgaaacagaag
ttacttctctcgtcaagcgaggctacttcagctggaacacgttacagtgtaccattgatc
aactcgcttgtgctatatactggaatgcaggctattcagcagctacaggcgggtgagaca
caggctcaaaatgttgtggccttacagatgtttaagtatttaagtatgaaacttgatacg
gaaggacgttatctgttccttaatgccattgccaaccagcttcgatatcccaacaaccac
acacattacttttccttcatcatgctctatctcttcttcgaatctgaccaggagatcata
caggaacaaataacaagagttctgttggaaaggctcattgtgaaccggccacatccatgg
ggcctcctaatcacattcattgagctcatcaagaatccaagatatggtttctggaaacaa
gccttcattaggtgtgcgcctgagattgagaaactctttgaatctgtagccagatcctgt
ggtggcctcaagcctgttgacgagggaatggtctctggttgggtctccgacaattctcat
tag
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integrated database retrieval system
