Camelina sativa (false flax): 104762205
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Entry
104762205 CDS
T05044
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104762205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104762205
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104762205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Cytochrom_D1
Beta-prop_Aladin
Ge1_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_NWD2_C
VPS8_N
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
104762205
NCBI-ProteinID:
XP_010483752
UniProt:
A0ABM0XC46
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Position
18:17370457..17373255
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AA seq
429 aa
AA seq
DB search
MVNSGDLDQALQDGNIFRQLNALIVAHLRLHNLSQVASAVASATMTPLDIEVPPNRLLEL
VAKGLAAENNGALRGLSSSVLLPCSYGSTTTPRTASIDFSVTHVKGSSKTIPKHESKTLS
EHKSVVRCARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDHAEPLN
DLDFHPRSTILISSAKDNCIKFFDFSKTSAKRAFKVFQDTHNVRSVSFHPSGEFLLAGTD
HPIPHLYDVNTYQCFLPSNVPDSGVNGAINQVRYSSTGSIYVTASKDGAIRLYDGVSAKC
IRSISGAHGKSEVTSAVFTKDQRFVLSSGKDFTVKLWEIGSGRMVKEYLGAKRIKLRSQA
IFNETEEFVISIDEASNEVVTWDARTAEKVARWPSNHNGTPRWIEHSPVESVFVTCGTDR
SVRFWKESV
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatagtggagatttggatcaggctctgcaagatgggaatatctttagacagctc
aatgctctcatcgtagctcatctccgtcttcacaatctctcccaggtggcaagtgcggtt
gcatcagcgacaatgacaccattggatattgaggttcctccaaaccgtcttctagagctt
gttgcaaagggtcttgcagcggagaacaacggggcattgagaggtctttcttcatcagtc
ttgttaccctgttcttatggatcaaccactactcctagaacagcttctatcgacttcagt
gttactcatgtgaaaggctcatcaaagactatcccaaagcatgaatccaagacactatca
gagcacaagagtgttgttaggtgtgcaagatttagtcctgatggaatgttttttgcaact
ggcggtgcagacacatcaattaagctctttgaggtgccaaaagtaaaacagatgatttca
ggagatactcaagctcgaccgttaatacggactttttatgatcatgctgaaccattaaac
gatcttgatttccaccctcggagcacgatcctaatatccagtgccaaagacaactgtata
aagttcttcgacttctcgaaaacctcagctaaacgagcattcaaagtttttcaggataca
cataacgtgcgctctgtatcttttcatccgtcaggagagtttcttcttgcaggaaccgat
catccaattccacatctgtacgacgtaaacacatatcagtgctttcttccgtcaaatgtc
ccagatagcggtgtaaatggagccattaaccaggtgcgatattcttccacgggatccatc
tatgttacagcctcaaaggatggagctattcgactctatgacggggtcagcgcaaagtgt
atacgttccattagtggtgcacatggaaaatcagaggtcacaagcgcagtgttcactaaa
gatcaaaggtttgttctctcatccggtaaggattttacggttaagttatgggaaataggt
tcaggtcgaatggtaaaggaatatctcggagcaaagcgaataaaactgcggtctcaggca
atctttaacgaaactgaagagtttgtaatctccatagatgaagcaagcaatgaggttgtt
acatgggatgccagaactgcagaaaaggtggcaagatggccttcaaaccataacggtaca
ccgcggtggatcgagcactcgccggttgagtcagtctttgttacttgtggaacagataga
tccgttcggttctggaaggaatccgtgtag
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