Camelina sativa (false flax): 104773522
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Entry
104773522 CDS
T05044
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104773522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104773522
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104773522
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104773522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
DMPK_coil
Motif
Other DBs
NCBI-GeneID:
104773522
NCBI-ProteinID:
XP_010496448
UniProt:
A0ABM0Y6V1
LinkDB
All DBs
Position
Unknown
AA seq
2467 aa
AA seq
DB search
MLMIPSKVAGHTRFLLQSLHDSDADSIAKELSQLFDFGVETSIPVLKTCLDCFTVRKSQP
DTLLQLEKVVSLVFKRVMKLPNLGTLLSHALKDVELTQSFLDDLTDTLEFSVSDKIAFAL
ALTVFDRLDAKTTGRNFLLAEIEQLCANTGQIDSSEQIQNVLLFLQSSEDLSRHLDSFLQ
ILSYAQPSDDFSFALTPILSDVHEADVFRSMGFHCDSAENEFDAILAEIDKETGVGDLMG
ELGCGFTADAQQCKEILSSFAPLREATISRILVNVARTCADLEDNHTTFSTFSLALGSCI
PSELPTPKSWNVDILVDTINLLAPGTSWRKVIENLDHDGFDIPNMESFAFFMRLYKTACK
EPFPLDAVCASVWKNMEGQLSFLKHAISAPPEVFTFMHSPRKLVYNDNMHSHEQQLGLSN
HAWLSLDLLDVLCQLAERGHAVLVSSLLQYPLTHCPRTLLLGMTHIKTAYNLIQREVVSA
IFPVIITNSQESGFILNIWHQNAELFLWGILGAQNLKADSMLRIIEICHELKILPVVLES
VPVSFSIRLAVLASLRGLLDIESWLPNCLHVYKDLFAEECLKFVKNVHFSDSEDFTAKHF
HPSDPLSDLHLDATTSLLKVLKAHDNVITSSQLVEEIEKVNAAILDCNSKLQNGEAKDSS
ASNAYGDDVEAEANAYFHQMFSSQLSVDAMVQMLSRYKDSLVQREKLIFECMIANLFEEY
RFFPKYPERQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALE
QFVNRLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHSAPSQFF
PGNGELSGSSTGQSALQHSSPIQLQQQNEVHIDDRSNVPSVPSNDARPLLPSLSTTSADI
SVIPRNPGISSSSSTSSGLGRQTRGATSTRFGSALNIETLVAAAERRENAIETPLQNVQD
KVSFIINNLSIANIESKGKEFADILPQQYYPWFAQYMVMKRASIEQNFHDLYLKFLDKVD
SKLLFKEILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDP
KSLIVEAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNL
KFDIEVLFKNLGVDIKEVAPTSLLKDRKREIDGNPDFSNKDLISQPQMISEPKTVSPLKQ
IDLPLDVANSPNTDVPSKLLSQYVAPQRVYPNTLMEEEKVATLGLSDQLPSPQGLFQSTP
SPLFSISQQLSAALPNIGNHVVINQKLSGFGMHFPFQRVVPLAMDRAIKEIVSGIVQRSV
CIACQTTKELVLKDYAMEPEESRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSL
QGLNIANESLEQIVQLVTNDNLDLGCAAIEHAATDKAIQTIDADIAQQLLLRRKHRDGAG
SSFFDPNMLSQNSGSFIPESLRPKPGHLSLSQQRVYEDFVQHPWQKQSTQTSHGLSAASS
SSSDVALGSGYGPVSGKVASDFLSSAGNARMDMVSRPSDISVDGFESSVSLLSSQVDQAG
DSASLQFAKSLPTSELNLVDPSDAVMKEIGTSLQTLTSAATMERVGGNNITQPSLSTRDA
LDKYQIVTQKMEELVANNAGDDEIQAVVSEVPEIILRCISRDEAAFAVAQKAFKALYENA
SINLHVSANLAILVAIRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLSLAEYN
VHMAKHLDGGRNKSATDFAISLLQSXNLHVSANLAILVAIRDVCKRVVKELTSWVIYSEE
ERKLNKDITIGLIQRELLSLAEYNVHMAKHLDGGRNKSATDFAISLLQSLVTEESSVISE
LHSLVDALAKLASKSGSPESLQQLIDIIRNPVTNSAGLSDSATGNEYNDRQKDEKVACNT
TSNTDVNTSLEYVESDPAGFRDRVSTLFESWYQICELPGANETACSQYVFHLHQTGLLKG
DDTTESFFRTLLEISVAHCISSEDISSGAVQSPQQAQSPSFLAIDMYAKLVFSILKYFPE
QESSSKLFLLSEIMAVTVRCIQKDAEDKKTSLNPKPYFRLFINWLLDLCSLDPGTDGANF
QVLTAFANTFHALQPLKIPAFSFAWLELVSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQF
LEPFLRNAELGGPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILS
SFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAALKGKQMKNDVDEYLMSRQQNSTF
LSELKQKLLLSSSEATSAGTRYSVPLINSLVLYTGMQAIQQLQAGETQAQNVVALQMFKY
LSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFFESDQEIIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPRYGFWKQAFIRCAPEIEKLFESVARSCGGLKPVDEGMVSG
WVSDNSH
NT seq
7404 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgattccttccaaggtcgccggtcatacccggttcttgctccagagccttcat
gattccgatgccgactccatcgccaaagagctttctcagttgtttgattttggagtggag
actagtattccagttctcaagacctgcttagattgcttcaccgtccggaaaagccagcca
gatacgctgttacagcttgagaaagtagtatccttagtgtttaaacgtgtgatgaaattg
ccgaatcttggaaccctgctctctcacgccctgaaagatgttgagcttactcagtcattt
ctggatgatttgactgatactttggaattttcagtctctgacaaaattgcctttgctctg
gccctcaccgtttttgatagattggatgcaaagacaactggacgcaactttttattggcc
gagattgagcaactctgtgccaataccggccagattgattcatctgagcaaattcagaat
gttctcttgtttctccagagttctgaggatctttccaggcatttggattccttcttacag
attttgtcttatgctcaacctagtgatgatttctcttttgctctcacacctatcctctcc
gacgttcatgaagctgatgttttcaggagcatgggttttcactgtgattctgctgaaaac
gagtttgatgctatcttagctgaaatcgataaggaaacaggtgttggagatctcatggga
gaattaggttgtggattcactgctgatgcccaacaatgcaaagagatcttgtctagtttt
gcaccgttaagagaggctactatctcaagaattcttgtcaatgttgctcggacatgtgct
gatcttgaagataatcacaccaccttttcaacattcagtttagcccttggttcctgcatt
ccatctgaacttcccacgccaaagtcgtggaatgttgatattctagttgatacaatcaat
ctgcttgctcctggcacaagctggaggaaagtaatcgagaatcttgatcatgatggattt
gacatccctaatatggagtctttcgcgtttttcatgcggctctataaaaccgcttgcaag
gagccatttcctcttgatgctgtatgtgcgtctgtctggaagaatatggaaggtcaatta
tcctttcttaagcatgcaatatctgccccaccagaagttttcacctttatgcattctcca
aggaagctggtatataatgataacatgcacagccatgagcaacagttaggactatccaat
catgcatggctgtcgctggatctcttggatgttctatgccaattggccgagagaggtcat
gctgttttggttagttcgttgctccagtatccactcacacattgtcctagaaccttgctt
cttggaatgacacacatcaaaactgcttataatctcatccagcgagaagtggtttctgct
atttttccagtcataataacgaattcccaggagagtggttttatccttaatatctggcat
cagaatgcagaactctttctgtgggggattttaggtgcccaaaatcttaaagcagacagc
atgctccgaataattgaaatctgccatgagctaaagattctccctgttgtcttagaatca
gttccagtctcgttcagtatcagattggcagtccttgcgtcattgagaggtcttttggac
attgagagctggttgccaaactgcctacatgtgtataaggacctctttgctgaggagtgt
ctcaaatttgtcaagaatgtgcatttcagcgactcagaggattttaccgccaaacatttt
cacccttctgatccgttatcagatcttcatctggatgcaacaacttctcttttgaaagtt
ttgaaagctcatgataatgtgattacttcatctcaactggtcgaggagatagaaaaggtc
aatgccgcaattttggattgtaattcgaaactgcagaatggcgaggctaaagattcatca
gcttccaatgcatatggagatgatgttgaggcagaagcaaacgcttatttccatcaaatg
ttttctagtcagttgagtgttgatgcgatggttcaaatgctttctcgatacaaggactct
ttagttcaaagggaaaaattaatttttgaatgcatgatcgctaatctgtttgaagaatat
cgttttttccccaagtatcctgagagacagctgaaaatagcctccatcctctttggttct
gttataaagcaccagcttataagttccctcactctggggatggccctgcgtctagtcttg
gattctttgcgtaaacctgcagattcaaaaatgtttctctttggaagcaaggctctagaa
cagttcgtgaaccgtctggttgaattgcctcaatactgcaaccatattctgcaaatatcg
catctgcgtagcactcaccctgagttagtcactgttattgaacaagcactttcaaggata
tcatctggtaatttagagtccgatgcctctgtttcacactctgctccctcgcagtttttc
cctggaaatggcgagttgagtggttctagcactggccaatctgcattacagcattcttct
cccatacagcttcaacagcaaaatgaagtgcatattgatgaccgcagcaatgtgcctagt
gtgccatctaatgacgcaaggccacttctgccatcgttatcaaccacttcggctgatatt
tctgtcattccaaggaatcctggcatttcatcgtcttcttcaacctcatctggtcttggt
cgtcaaactcgtggagctacttcgacaaggtttggctctgctttgaacatagaaaccttg
gttgcagctgctgaaagaagagaaaacgcaatcgagactccactgcagaatgttcaggat
aaagtttctttcataatcaataatctctctatagcaaacattgaatcgaaagggaaagag
tttgctgatattttacctcaacagtattatccttggtttgcacagtacatggttatgaaa
agagcgagcatcgagcaaaattttcatgatctgtacctgaagttcttggataaagttgat
tcgaagctgttatttaaggagatacttcaaaatacatatgaaaattgcaaggttcttttg
ggttcagagcttataaagtcaagttctgaagagcgatctcttcttaaaaatttaggcagt
tggcttggaaagttgaccattggaaggaattatgttttaagggcgcgagaaatagatcca
aaatccttgattgtggaggcatatgaaaaagggttgatgattgcggtcattccatttact
tcaaaggttctggagccatgccaaaacagtattgcgtatcagcctcccaatccttggacg
atggctatacttgggttgctcgctgagatttattcaatgccaaacctaaaaatgaatttg
aagtttgacatagaggttttattcaagaaccttggcgttgatataaaagaagtagcgcca
acttcccttctaaaggaccggaagagagaaatagatgggaatcctgattttagtaacaaa
gatcttatctctcagccgcagatgatatcagagcctaaaacagtttctcctcttaagcaa
atagacctacctcttgatgttgcaaattctccgaatacagacgttccctcgaagttatta
tcacagtatgtagcccctcaacgtgtttatcctaatactttgatggaagaggaaaaagtg
gcaactctaggtttgtctgatcagctgccgtcacctcaaggactgttccagtcaactccg
tccccattgttttctatcagtcagcagttgtcagcagcacttcccaacattggaaatcat
gttgttattaatcagaagttgagcggttttggtatgcactttccatttcagagagtggta
ccacttgccatggacagagctatcaaggagattgtgtctggtattgtgcagcgaagtgtt
tgtattgcatgccaaacaacaaaagaacttgtgctgaaggattatgctatggaacccgaa
gaatcacgtatttataatgcagctcacttgatggttgcgagtttagctgggagtttggct
catgtgacatgcaaggaacccttgcgtacttcaatatccggtcatctacggaattctctc
cagggtctgaatattgcaaatgaatctcttgaacaaattgtgcaacttgtcaccaatgac
aatcttgatttgggttgtgcggctattgaacatgcggctacagataaggcaatacaaaca
attgatgcggatattgctcagcaattgttgttacggagaaagcacagagatggtgctgga
tcctccttttttgatccaaatatgctatcgcagaattccggtagttttattcccgaatcc
ctccgtccaaaacctggacacctctctctgtctcagcagcgagtttatgaggactttgtt
caacatccttggcaaaagcagtcgacccagacttcacacggtttatctgctgcatcaagc
tcatctagcgatgttgcacttggtagtggttatggtccagtatcaggaaaagttgcttct
gactttttgtctagtgctggaaatgctaggatggatatggtctcccggccatcagatatt
tctgtggatggttttgaatcttcagtctcgcttttgagctcacaagttgatcaagctggt
gactcagccagtcttcaatttgctaaatcactaccaacctcagaattgaatctggttgat
ccctctgacgctgttatgaaagaaattggaacgtcactgcagacattgacttcagctgct
accatggaacgagttggtggaaataatattacacagccttctctgtccacgagagatgca
ctggataagtatcagattgttactcagaagatggaggaactagtggctaataatgcagga
gatgatgaaattcaggccgtagtttctgaagttcctgaaattatcctcagatgtataagc
agagatgaagccgcttttgctgtcgctcaaaaagctttcaaggctctttatgagaatgca
tcaattaaccttcacgtcagtgctaacctagcaatacttgttgctattcgtgatgtttgc
aagcgtgtcgttaaagagctcactagttgggtaatttattcagaggaggagaggaagctt
aacaaagacattactattggtcttattcaacgcgagttgctcagcctagcggagtacaat
gtccacatggcgaagcatcttgatggagggagaaacaagagcgcaactgactttgctatt
tctctactccaatccnttaaccttcacgtcagtgctaacctagcaatacttgttgctatt
cgtgatgtttgcaagcgtgtcgttaaagagctcactagttgggtaatttattcagaggag
gagaggaagcttaacaaagacattactattggtcttattcaacgcgagttgctcagccta
gcggagtacaatgtccacatggcgaagcatcttgatggagggagaaacaagagcgcaact
gactttgctatttctctactccaatccttggtcactgaagagtccagtgtcatttcagag
ctccacagtcttgttgatgcgctggcaaagcttgcctcaaaatccggatctcctgagtcg
ttgcaacagttaattgacatcatacgaaatccagttactaactcagctggcctctctgat
agtgcaaccggaaatgagtacaatgataggcaaaaggatgaaaaggttgcgtgcaatacc
acttctaacacagatgtgaataccagcttggaatatgtggaatcagatcctgcgggcttc
cgggatcgggtgtccacgctttttgaaagctggtatcaaatctgcgaacttccgggtgca
aatgaaactgcttgttcacaatatgtctttcacttgcatcagactggattactcaaggga
gatgatacgacagagagttttttccgaactcttctggaaatttctgttgctcattgtata
tcttctgaagatataagttctggtgctgtgcaatctcctcagcaagctcagagtccatca
ttcctcgccatcgatatgtatgcaaagcttgttttttcgatcttgaagtatttccctgag
caggagtccagcagcaagttatttcttctttcggagatcatggctgtcactgtgagatgt
atacaaaaggacgcagaagataaaaagacatcactcaatccaaaaccatattttcgattg
ttcatcaactggctgctggacttatgttccttggatcctgggactgatggtgcaaacttt
caggttctcacagcttttgccaacacattccacgcgttgcagcctcttaagattcctgct
ttcagctttgcatggctagagcttgtcagccacagaagcttcatgcccaaattacttaca
gtaaatggccagaagggttggccatatgttcaacgcctgctggtggacttgctccagttc
cttgagccatttttaagaaatgctgaactcggaggaccagttcatttcctatacaaaggg
acattgagagtgttgctggtgctgcttcatgacttcccagaatttctctgtgattatcat
tttactttctgtgatgtgattccttcaagttgcatacaaatgcggaatattattctcagt
tcttttccacggaacatgaggcttccagatccttctactccaaacttaaagattgatttg
ttgcctgagattgtagaagctccctgtatcctttccgaggttgatgctgcgctaaaagga
aagcaaatgaaaaatgacgtggatgagtatcttatgtcgaggcaacagaattcaactttc
cttagtgagctgaaacagaagttacttctctcgtcaagcgaggctacttcagctggaaca
cgttacagtgtaccattgatcaactcgcttgtgctatatactggaatgcaggctattcag
cagctacaggcgggtgagacacaggctcaaaatgttgtggccttacagatgtttaagtat
ttaagtatggaacttgatacggaaggacgttatctgttccttaatgccattgccaaccag
cttcgatatcccaacaaccacacacattacttttccttcatcatgctctatctcttcttc
gaatctgaccaggagatcatacaggaacaaataacaagagtgctgttggaaaggctcatt
gtgaaccggccacatccatggggcctcctaatcacattcattgagctcatcaagaatcca
agatatggcttctggaaacaggccttcattaggtgtgcgcctgagattgagaaactcttt
gaatctgtagccagatcctgtggtggcctcaagcctgttgacgagggaatggtctctggt
tgggtctcagacaattctcattag
DBGET
integrated database retrieval system
