Camelina sativa (false flax): 109124551
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Entry
109124551 CDS
T05044
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109124551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
109124551
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109124551
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
TPR_1
TPR_14
TPR_19
TPR_10
TPR_8
HEAT_Nup120
TPR_11
Coatomer_E
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
109124551
NCBI-ProteinID:
XP_010435435
UniProt:
A0ABM0U3X7
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Position
10:18172962..18185584
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AA seq
777 aa
AA seq
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MDSRDPSSAVASDAARDASLLSEDAAVLSVTSTLAKSALSCFQSGKFEDCIDILIQLDQK
QHNDPKVLHNMAIAEYFKGGCSKSKKLLEELNCVKKQSEELASAAREQVEAVNPGTNVSV
SKDQFDSTVTTLNIAVTWFHMHQFTKSSSILEPLFQNIGRLNETIALQICFLLLDIALAC
HDAVKFSAVFDYMDKAFGVGFGSHEENGSTMQLSSNQGSKTSSLLSSSVVADTVAESSLC
EETLDYDNVLAAEYDAEKRMKSVGHIPANNLLKTLSERSFSTADLKLELQLYKVRFLLLT
RNLKLAKREVKHAMNIAQKRDSSMALLLKSQLEYAHGNHQKAMKLLVVSGIHKEAGTSGI
FNNNLGCIYYQLGKYEASSQLFSKALRSCSSLRNEKPVKTFSLSQNKSLLITYNMGLLYL
ARGEPLLAAQCFQKASVVFCRQPLIWLRLAECCMMALQNGLLDRSEIRVNVVGKGKYRKL
MIEENGHLELDGSTQCGKLSLPLARACLSNGIYLLNESLLNESKSDRESTLSVGMNETKE
ASSADHGEANTNSDLKEAKGGLNQDIMQSSLSAFKDIQSREKLLIKQALLANMAYVELEL
ENPIKALAAANSLLQLPDCSKIYVFLGHLYAAEALCLLNRPVEAGAHLSAYLVGQDDFKL
PYEQEDFDQWRMHTSSECEETLDSSTGNARDSVFLKPEEARGALFADLAALLATQGHHDQ
AKAMITHALTLLPNNVQATVTAVYIDMMLGRSQDALTRLKQCTRVSFVPGRLEVRAS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggattctcgagatccgtcgtccgctgtagcatccgacgccgctagagatgcgtcgtta
ctctccgaagacgcagccgttctctctgtaacctctacactcgctaagtccgctctttct
tgcttccaatctggaaaattcgaagactgtatcgacattttgattcagctcgatcagaag
cagcataacgatcctaaggttctacacaatatggcaattgcagagtacttcaagggtggt
tgctcgaaatccaagaaactgttggaagagcttaactgtgtcaagaaacaaagtgaagaa
cttgcttctgcagcaagagaacaagtagaagctgtaaaccctggaactaatgtctctgtg
tcgaaggatcaatttgatagtacagtaacaacgctcaacattgcagttacctggtttcat
atgcatcagtttacaaaatcttcatccattctagaacctttgttccaaaatattgggcgg
ctaaatgagacaatcgcacttcaaatctgttttttgttgctggatattgcactggcttgt
catgacgctgtaaaattttcggctgtgtttgactatatggacaaagcttttggtgttggt
tttggaagccacgaagaaaatggaagcacaatgcaactttcgtcaaatcagggatcaaag
acatcttctctcctgagcagctcggtggtggcagatacagttgctgaaagtagtttgtgt
gaggaaactctagattatgacaatgtgctagcagcagaatatgatgcagagaaacgaatg
aagtcagttggtcatataccggcaaacaatcttctcaagacattaagcgaaaggtcattc
tccactgctgatctgaagctcgagttgcagctttacaaagtccggtttttgcttcttacc
agaaacttgaaactggcgaagcgtgaagttaaacatgcgatgaacattgctcaaaaaagg
gactcttctatggctctcctcttgaaatcccagcttgaatatgctcatgggaatcatcaa
aaggctatgaagcttttggtggtctctggtattcataaagaagcagggacttcaggaatc
ttcaacaacaaccttggttgcatatactatcagcttggaaaatatgaagcttcctctcag
ttattttcaaaagctctaaggagctgttcatcacttagaaatgagaaaccagtgaagacg
ttttctctctcacagaataagtctttgttaatcacatacaacatgggtttgctttatttg
gcgcgtggggagcctctacttgctgctcaatgcttccagaaggctagtgttgttttctgc
agacaacccctcatttggctccgtttagctgaatgctgtatgatggctttacaaaacggg
cttttggatagatcagaaatcagagtcaatgtagttgggaaagggaagtacagaaaactt
atgattgaagaaaatggacatctggaacttgatggtagtacccaatgcgggaagctttca
ttaccactagcacgggcttgtctctcaaatggtatatatctgctcaatgagtctctcttg
aatgaatctaaatcagatcgtgaatcgacattatccgtggggatgaacgagaccaaagaa
gcatcatccgctgatcatggggaagctaacacgaactcagacttgaaagaggcaaaagga
ggattgaaccaggacataatgcaaagctccctctctgctttcaaggatattcaaagtaga
gaaaagctgttgattaaacaagctctgcttgccaatatggcatacgtagaactggagttg
gagaatcctatcaaagccttggcagctgctaattcactcttgcaacttcctgattgttca
aagatctatgttttcttaggccatctttatgcagcggaggccctctgcttgctcaaccgt
cccgttgaagctggcgcgcatttatctgcctatctagttggacaggatgattttaaattg
ccatatgagcaagaagactttgaccaatggcggatgcacacaagttctgagtgtgaagag
acgttggattcgtcaacgggaaatgcccgggattcagttttcctaaagccagaagaagct
cgtggagcactttttgcagaccttgcggcgctgcttgccacacaaggacatcatgaccag
gccaaagctatgataacacacgcattaactctcttaccaaacaatgtacaagctacagtt
acagcagtctacattgacatgatgttgggtaggtcgcaagatgcccttactcggttaaaa
cagtgtacacgtgtgagctttgttccaggcagactggaagtgagagcctcgtag
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