Cannabis sativa (hemp): 115700616
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Entry
115700616 CDS
T08987
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115700616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csav03019
]
115700616
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
115700616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_16
TPR_8
TPR_14
TPR_CcmH_CycH
TPR_9
TPR_7
ARM_TT21_C
TPR_12
BTAD
Sel1
Motif
Other DBs
NCBI-GeneID:
115700616
NCBI-ProteinID:
XP_030484084
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All DBs
Position
8:46196789..46200820
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AA seq
1193 aa
AA seq
DB search
MEREKSAKLQHLQESLQANPEDSSLHFDLGVFLWENWEEDNETLKSFKEKAAEHFLASAR
LNPQNGDAFRYLGHYYYGGGGGGDSIVDPQRAVKCYQRALSLNPDDSLSGESLCDLFDSL
GKVTLELTVCRDASQKSPRAFWAFRRLGYLQLHERKWSEAVISLQHAIRGYPSCADLWEA
LGLAYNRLGRFTAAIKSYGRAIDLEPMKVFALVESGNIYVMLGSFKKGVEQFRLALEISP
QCISANYGLASGLFGWAKECIYLGAFQWGATLLEEASKVAIETTSLAGNLSCIWKLHGDI
QLTYAKCYPWMEESQSLELGVSVEDFNVSVSTWKQACCLAATSAKHSYQRALLLTPWEAN
FYADIAISSDIVNSFTKSSDLDINVWQPPEKMALGALLLEPENHEFWVALGCLSNFNPLK
QHSLIRSLQLDVSHAVAWSYLGKIYREMDEKKLARLAFDCSRSIDPSLALPWAGMSADFH
GKEAPVDEAFESCLRAVQTLPLAEFQIGLAKLAVISGHLSNPQVFGAIRQAVQRAPQYPE
SHNLKGLVCEARFEYQTAATSYRLARCALTNLSTGFTKSQIRDISINLARSLFKAGNALD
AVEECENLKKEGLLDGEGLQIYALSLWKLGQSDLALSVAKTLAANVSTMDHNFVAAPISL
ICRLLYYISGQDSAINIILKMPKELFQSSKISFVVSAIHALDGSNRLEPVVSTSRKFIKS
HEDICGMHCLIALGKLLKNGSGHSIGLQSGVAHLRKVIHMYPNSCLLRNLLGYLLLSGEE
WNDTHLATRCCNGNATCSPIDGLKSAYEIVGAGAVACYAIGSSNPKFTFPTCPNQCLNEL
GTVQQLQKRLRQEPWNRTLRYLLILNLLQKAREERFPRNLCTMLERLISVALSNECYSET
TDLSYQYEKFQLLLCASEISLQSGNQNGCIEYAKVASTIAIPDSYLFFAHLLLCRAYASD
GDVMNLKKEYLRCLELETDCDIGWICLKMIESQYTLQNGSNILELYMKDCLVGEKKSWNA
WMALYNLVQGLIAIQKQDLYSAKEFLEQACTLSSAESCIQLCYGSTCLELAKEWGDSELL
LLAIRSLTKAQKACVITTPLPIISALLAQAEGSIGSDSKEKWEKNLRLEWYTWSPEMRPA
ELFFQMHLLAKESRGGPDSSLEYCQTPLRWVLRAVHTNPSCMRYWKVLQKLLD
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaacgagaaaaatcagccaagcttcaacacttacaggagtcccttcaggccaatcct
gaagattcctctcttcatttcgatctgggagtttttctctgggagaattgggaggaagac
aatgaaacactcaaatcattcaaagaaaaagcagctgaacacttcttagcctccgccaga
ctcaacccccaaaacggcgacgcattcagatacttagggcattattactatggcggagga
ggaggaggagactccattgttgatccccagagagctgttaagtgttaccaaagggcttta
tcccttaatcctgacgattctctttctggggaatccttgtgcgatttattcgattcatta
gggaaagtgaccttagaactcaccgtttgtcgtgatgcttctcagaaatctccaagggcc
ttttgggcatttaggagattgggttatttgcaactccatgaacgtaaatggtcagaagct
gtaattagtcttcaacatgccattagagggtacccttcttgtgctgatctttgggaggct
cttggtcttgcttataacagattaggtaggtttacggctgcaattaagtcttatgggaga
gccattgatttggagcccatgaaagtttttgctttggtcgaaagtggaaacatttatgtt
atgcttggttctttcaaaaagggagttgaacagtttcgtctagctttagagatttcacct
cagtgcatatctgcaaattatgggcttgcttctgggttgtttggttgggctaaggaatgt
atttatctgggagcttttcaatggggtgctacattgttagaagaagcatctaaagttgcc
attgaaactacaagcttggctgggaatttatcatgtatttggaagttgcatggtgatatt
cagcttacatatgctaaatgttatccatggatggaagagagccagagtttagaacttggt
gttagtgttgaagattttaatgtctctgtcagtacttggaaacaagcctgttgtttggct
gcaacttctgctaaacactcatatcagcgagcattgctcttgactccatgggaagctaat
ttttatgcagatatagcaataagttcagatattgtcaattctttcaccaaaagttctgat
cttgacataaatgtttggcagccaccagagaagatggcattgggggccttgttacttgaa
cctgaaaatcatgagttctgggtggctttgggatgtttatctaattttaatccactgaaa
caacattctttgattaggagtttgcaattggatgtctctcatgctgttgcttggtcatac
ttgggcaagatttatagggaaatggatgagaagaaactggcaagacttgcttttgattgt
tcaagaagcatagatccttcacttgcattaccatgggctggcatgtcagctgatttccat
ggtaaagaggctccggtagatgaagctttcgagagttgtttacgagctgttcagacactt
cctcttgcagaattccaaattggtcttgcaaagcttgctgtaatttcgggccacctttca
aatccacaggtttttggagctatcaggcaggctgtgcagcgtgctcctcagtatcccgag
tcccataatttaaaagggctggtttgtgaggcacggttcgagtatcaaactgctgctact
tcctataggctagcacgttgtgcactcaccaatctttcaacaggttttacaaaatctcaa
atcagagatatatcaattaatttggccagatcactttttaaggcagggaatgctcttgat
gctgtagaggaatgtgaaaacttaaagaaagaaggattgcttgatggtgaaggtttgcaa
atatatgctttatctttatggaaacttggtcaaagtgatttggccctttctgtagctaaa
actcttgctgctaatgtttctactatggatcataattttgttgctgcccctattagttta
atctgccgattgctttattacatttctggtcaagattcagcaatcaatattattcttaaa
atgccaaaggaactgtttcaaagttcaaaaattagctttgttgtgtctgccattcatgct
cttgatggaagtaatcgactagagccagttgtttcgactagtcggaagtttattaaatct
catgaagatatatgtggaatgcattgtctaattgcacttggtaaactgctgaaaaatgga
tcaggacattctattgggttacagagtggagtggctcatcttaggaaagttattcacatg
tatccgaatagttgtttgttaaggaatctactaggctatttattgttatctggtgaagaa
tggaatgatactcaccttgctactaggtgctgtaacgggaatgcgacttgttctcctatc
gacggtttgaaatcagcatatgaaattgttggtgctggagcagttgcttgctatgcaatt
ggcagtagtaatccaaagtttactttcccaacctgcccaaatcaatgtctgaatgaactt
ggaactgtccagcaactgcagaaacgcttacgccaagaaccatggaataggactctgaga
tatttacttatcctcaatttactgcagaaagcccgagaagaaagatttcctcgtaatcta
tgtactatgctcgagcggctaatctctgtggctctttcaaatgaatgttattctgagact
actgatctgtcatatcaatacgaaaaattccaacttctactttgtgcttctgagattagt
ttgcaaagtgggaatcaaaatggttgtattgagtatgccaaagttgcttcaacgattgca
attcccgatagttatttgtttttcgctcatttgcttttatgccgtgcctatgcatcagat
ggtgatgttatgaaccttaaaaaagagtacttaagatgtttggagttggagacagattgt
gatattggttggatttgtctaaagatgattgaatcgcaatatactttgcaaaatggttca
aatatcttagagttgtacatgaaagattgcttggtgggagagaagaaatcatggaatgct
tggatggctctatataatctagtccaaggtttaattgccatacagaaacaggacctttac
tcagcgaaggagtttctcgaacaagcttgtacattgtcaagcgccgaaagctgcatacaa
ctctgttatggttccacctgtttagaacttgccaaggaatggggtgattcggagttgtta
ttgcttgcaattagaagccttactaaagctcaaaaggcttgtgttattactaccccactt
cctatcatctcagcattattggcccaagctgagggtagcattggctctgatagcaaagag
aaatgggagaaaaacttgcgtttggaatggtatacttggtcaccagagatgagacctgca
gagcttttcttccaaatgcatttgcttgcaaaagaatcaagaggtggaccagactcttct
ttggagtactgtcaaactccattgagatgggttctaagggctgttcatactaatccttct
tgcatgagatattggaaggtgttgcagaagctacttgattga
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