KEGG   Cannabis sativa (hemp): 115714394
Entry
115714394         CDS       T08987                                 
Name
(RefSeq) uncharacterized protein LOC115714394
  KO
K12828  splicing factor 3B subunit 1
Organism
csav  Cannabis sativa (hemp)
Pathway
csav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115714394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csav03041]
    115714394
   03036 Chromosome and associated proteins [BR:csav03036]
    115714394
Spliceosome [BR:csav03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    115714394
 Complex B
    115714394
 Complex C
   U2 SnRNP specific factors
    115714394
Chromosome and associated proteins [BR:csav03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    115714394
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_MROH2B_C TPR_DNAAF5 HEAT_ECM29 HEAT_EF3_N TPR_IPO5 Htt_N-HEAT_1 HEAT_2 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 115714394
NCBI-ProteinID: XP_030498941
LinkDB
Position
4:76641057..76645366
AA seq 1268 aa
MASTDPEIAKTQEERRKMEQQLASLNSVTFDTDLYGGNDRDAYVSSIPVTDDDENNDPMD
NEVVRKLASYTAPKSLINDVPRGGDDDAGLGPKKPNSILQREDAYRQRRLNQVISPDRND
PFASGEMTPDPSVRTYADVMKELALKKKEQETLRLISEKKKDQEEAAKAAAERGETAPVA
AGAPQKRRNRWDLSQDDGSAKKPKTSDWDLPDTTPNRWDTTPTPGRLGDATPGAGAGRRN
RWDETPTPGRLVDSDATPAGAVTPGATPSGMSWDSTPKLGGLATPTPKKQRSRWDETPAT
MGSATPGATPAAAYTPGVTPVGAAELATPTPGAINLRGSITPEQYNLLRWEKDIEERNRP
LTDEELDSMFPQEGYKILDPPASYVPIRTPARKLLATPTPMATPLYSIPEENRGQQFDVP
KESAGGLPFMKPEDYQYFGALLNEDDEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALR
QLTDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVV
IEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVAS
ALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDE
NQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLM
DAIYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFFKN
FWVRRMALDRRNYRQLVETTVEMANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVA
NLGASDIDPRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVQPYLPQICGTI
KWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGA
LKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWM
RICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
LMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEG
MRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPVLDDEQNNIYS
RPELVMFL
NT seq 3807 nt   +upstreamnt  +downstreamnt
atggcgtccacagacccagagatagcgaagactcaggaagaacgcaggaagatggagcag
cagcttgcttcgcttaactctgttactttcgatacggatctctatggtggaaatgatagg
gatgcttatgtctcatccattcctgtcaccgacgatgatgagaacaacgaccctatggac
aatgaggttgtgcgcaagttagcttcttacactgctcctaagtcgctcataaatgatgtc
cccaggggaggagacgatgatgctggtttggggcctaagaaacccaattcgattttgcaa
cgagaggatgcatatcgtcagaggaggttgaaccaggtgatttcgcctgatcgaaatgat
ccttttgcatcgggggagatgacaccggacccctcggtgaggacctatgctgatgtcatg
aaggaattggccttaaagaagaaggagcaggagactcttaggcttatttcggagaagaag
aaggatcaagaagaggccgctaaggcagcggctgagaggggtgagactgcccctgtggct
gctggtgctccccagaaaaggagaaataggtgggacctgtctcaggatgatggctctgca
aagaagcccaagacttccgattgggatttgcctgatacgacaccaaaccggtgggacaca
actccaactccagggagacttggggatgcgactcctggtgctggtgctgggaggaggaat
cggtgggatgaaactcccacgcctgggcggttggtggattcagatgccactccggctggt
gctgtcacccctggtgctacaccttctgggatgtcttgggattcaacccctaagcttgga
gggctagccacgccaactcctaagaagcagaggtctaggtgggatgagacaccagcaaca
atgggaagtgccacacctggagctacaccagcagctgcttatacacccggtgtgaccccg
gtgggagcagctgaacttgctacgccaacgccaggggctattaatttgcggggttcaatt
actccagaacagtataacttgttgagatgggagaaagatatcgaggaaaggaaccgtccc
ttaaccgatgaagagcttgattctatgtttccacaagagggatacaagattttggaccct
ccagcttcatacgtacctattaggacacctgcgagaaagcttcttgctaccccaacaccg
atggcaactcctctttattccatcccagaagagaatcgtgggcagcaatttgatgttcca
aaggaatctgcaggtggcttgccatttatgaagccagaggattaccagtattttggggct
ttgttgaatgaggatgatgaggaagaattgtctcctgatgaacagaaggagcgtaaaatt
atgaagcttctgctcaaggttaagaatggtacacctccacagaggaagacagcattgaga
cagcttactgataaagctcgagagtttggtgccggtccattgtttaaccgcattctgcca
ttgcttatgcaacccactttggaagaccaagagagacatcttttggtcaaggttattgat
agagtgctgtataaattggatgaattggtgagaccctacgtgcacaaaattcttgtcgtc
attgagcctttgttgattgatgaagactactatgctcgtgtggaagggagagagattatc
tccaaccttagtaaagcagctggactggctactatgattgctgccatgcgtccagatatt
gacaacattgatgaatatgttagaaatacaactgctagagcttttagtgttgttgcttct
gcccttggtattcctgctctattgcctttcttgaaagctgtttgtcagagtaagaaatca
tggcaagctcgacatactggaattaagattgtccagcagattgctatcttgattggttgt
gctgttcttccacatttgaggtctcttgttgaaattattgagcacgggctcaatgacgag
aatcaaaaagtgaggactattactgcattgtcacttgctgcgcttgctgaggctgccgct
ccttatggtattgagagctttgactctgttctgaagcccttgtggaagggtattagatca
catcgtggtaaggtcttggctgcatttttgaaggccatcggttttattattcctttgatg
gatgccatatatgccagttactataccaaggaagtgatggtaatattgattcgagagttc
cagtcacctgatgaagaaatgaagaaaatagtgctgaaagtggtgaagcagtgtgtgagt
acagagggtgttgaggctgattatatcagaaatgatattcttccggagttctttaaaaac
ttttgggttaggagaatggcattagataggagaaattataggcaactagtggaaacaact
gtagagatggcaaacaaagttggtgttgctgatattgtcggacgaattgttgaggatcta
aaagatgagagtgaaccatatagacgaatggttatggagacaattgaaaaggtagttgca
aatctgggtgcatctgatatcgaccctcgattggaggagcttttaatcgatggaattctt
tatgctttccaagagcagaccagtgatgatgctaatgttatgcttaatgggtttggagca
gtggtaaattctcttggacagagagtccaaccctatttgcctcagatttgtggtactatc
aagtggcgtttgaataacaagagtgcaaaggtgagacagcaagctgcggatcttatttca
aggattgctgttgtcatgaagcagtgccaagaggaacaacttatgggccatcttggtgtt
gtactgtacgagtacttgggagaagaataccctgaagttcttggatcaatcttgggagca
ttgaaagcaattgtcaatgtcattggtatgacaaagatgacacctcctattaaagatttg
cttcctagattgactccaattttgaagaacaggcacgagaaagtccaagaaaactgtatt
gaccttgtaggtcgaattgctgaccgtggtgcagagtttgtcccagctagggagtggatg
aggatttgttttgaacttcttgagatgctcaaggcccacaaaaagggtatccggcgagct
actgtgaacacatttggctacattgcaaaagccatcggtccacaggatgtcctggcaact
ttattgaacaatctgaaggttcaggaacgtcaaaaccgtgtctgcaccactgtagctatc
gccatagttgcagaaacttgttctcctttcacagttttgccagctctgatgaacgagtac
cgtgttcctgagctgaacgttcagaatggtgtcctcaaatcgctatctttcctgtttgag
tacattggcgaaatgggaaaagactacatatacgcagttactccattgctggaggatgct
ctcatggacagagatctggttcatcggcagacagcagcttcagctgtcaagcacatggct
ttgggagtggctggtttgggttgcgaggacgcgttggttcacttgctgaattatgtgtgg
ccaaacatattcgagacctcgcctcacgtcattaatgccgtcatggaagccattgaaggc
atgagggtggccttgggagctgcggttgtgctaaactactgtctccagggtctctttcat
cctgctcgaaaggtcagagaagtttactggaagatttataactcgttgtatattggagct
caagatgcccttgtagcagcttatccagttctggacgatgagcaaaataacatatatagt
aggcctgagttggttatgtttctgtga

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