Cannabis sativa (hemp): 115716093
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Entry
115716093 CDS
T08987
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115716093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
115716093
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
115716093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
115716093
NCBI-ProteinID:
XP_030500666
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All DBs
Position
5:complement(71405223..71411034)
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AA seq
1074 aa
AA seq
DB search
MDYSNPVCRRTRSKTEEFFRSLSKPRRRETTPTEVQIKVENEDFGNDSVAVFVDKENNLG
FGFESRKVGSQSQSQSQANNSMGMNGTRDNPLCIDEDDEDEDLMNNIDEDKCSSDSEFLL
SSEDFDHDDDDSEDSSDCSYDIYEDREERHCRKRRDFEMNGEGGESCSGVWRKSGSGKTN
GGFFRKRYGEFTGVRESSDRFGGGEFSGRKEKGPSPEIWVNGGVDDEGNVGEPAHKRFSQ
AKRARLVSHSKSNRVIVKDGDGTASQPFCIDQDNDDGGVGAGELEFELEEGNQEPELFTD
ELFTDQIEKVVRKRLKSDKTREKKLDVKLDVARILLDSITEGTALQDPNEIKTQENDNLR
LNEERICRKFFFGEETKQVEKSAEELELEKLWDEMNLAVAAGEIGSLPVDDMVEDEDEDV
LSSERDVESLCNHGRHQLIYDEQIGYVCSRCLHVQVEIQHIMPPFERNPWGQSEFRDLGF
KNSSVFDKLGEQDYNCGSLSGNGFPEHADTVWDFIPGIKDTMYPHQQEGFEFIWTKIAGG
IRADDLKGRNMESSSEEGCIISHAPGTGKTRLTIVFLQSYLKLYPMCFPVIIAPCSMLLT
WEEEFRKWKVDIPFHNYNSTDLSGKEDEVAARLLLRGGVRHDPEAVRAVKLRSWAKGGAI
LGITYSLFAQRVRRANDDKAKQSAKILVDRPNLVVLDEGHTPRNDQTRMWKALSRLKTRK
RIVLSGTVFQNNLSELYNTFCLVMPRFEEGEPSTMDNRDKEAKKAWNALTKSVERMEYVS
PELRALVQSYAHVHEGNVLDSLPGFKVSMVILEPSTLQKNLLKVIHERRKNQFEFEFGVS
MVSVHPSLFLKIKFEALTAPTTDKDELKRLRLNYHAGVKTKFLVELIRLCESINEKVLVF
SQYISPLRLVKKQLESHFSWSEKAEISYIDGKMDFKLRQSIINVFNNPSSNVRVLLASLR
TCSEGINLVGASRVVLLDIHWNPSVEWQAISRAYRIGQKKIVYIYRLFTHGTMEREKYSR
QDEKHKMSKLVFSKSSCHSNPPKTKVREDRILEEMVQHEKLKDMFVDIVSEREK
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggattactctaatcccgtttgtagaagaacaaggtcgaaaacagaagagttcttcaga
agcttgtcaaagccgaggagaagggaaacgacgcccactgaagtacagattaaagttgag
aatgaagattttggtaatgattctgtggctgtctttgttgataaagagaataacttggga
tttggatttgaatcgagaaaggttggttctcagtctcagtctcagtctcaggctaataat
tctatggggatgaatggaactagagataaccctttatgcattgatgaagacgatgaagat
gaggacttaatgaacaacattgatgaagataaatgtagcagtgacagtgagtttttgctt
tcatctgaggactttgatcacgatgatgatgacagtgaggacagttcggactgctcgtac
gacatttatgaggatagagaagagcggcattgtcgtaaaaggagggattttgagatgaac
ggtgagggtggagaatcgtgttctggtgtttggagaaagagtgggtcagggaaaacaaat
ggtgggttttttaggaaaagatatggtgagtttacaggtgtgagggaaagtagtgatcgg
tttggtggtggtgaattcagtgggagaaaagagaaagggccaagtccagagatttgggtt
aatgggggtgtagatgatgaggggaatgtgggtgaacctgctcataagagattttctcaa
gctaaaagagctaggttggtttcacactcaaaatcaaatcgtgtaatagtcaaggatgga
gatggaactgcaagtcaacctttttgcattgaccaggataatgatgatggtggtgttggt
gctggtgaacttgaatttgaacttgaagaaggaaatcaagaaccagaactttttactgat
gaactgtttactgaccagatagagaaggtggtgaggaagagattaaaatctgacaagact
agagaaaagaagctcgatgtgaagcttgacgtggctaggattcttttggactccattaca
gaaggaacggctttacaagatcctaatgagattaagactcaagaaaatgataatctgagg
ctaaatgaagaaaggatttgtaggaagttcttctttggagaggagactaagcaagtagag
aagtcagctgaggagcttgagttggagaaactttgggatgaaatgaacctggctgtagct
gctggtgagattggttcattgcctgttgatgatatggttgaagatgaagatgaagatgtt
ctttcgagtgaaagggatgtggaatccctttgtaatcacggcagacatcagctgatttat
gatgagcaaattggatatgtatgctctcgctgtttgcatgtccaagtggagatccagcat
attatgccaccttttgaaagaaatccatggggacaatctgaatttagagaccttggcttc
aaaaacagctctgtctttgataaactcggggagcaagattataattgtggttcactctct
ggcaatggcttccctgaacatgctgatacagtttgggatttcattcctggtatcaaagat
accatgtatccgcatcagcaagaaggctttgagtttatttggacaaaaatagctggtgga
attcgcgctgatgatcttaaagggaggaacatggagagctccagtgaggaaggttgcata
atatcacatgctcctggaactggaaaaacccgcctcaccattgtcttcttgcagtcgtat
ttgaaactgtaccccatgtgcttcccagtcattatagctccttgcagcatgctccttacc
tgggaagaagagtttcggaagtggaaggttgatataccatttcacaattataactcaaca
gatttatcaggtaaagaagatgaggtagctgctcggttactactgagagggggtgttcgc
catgaccctgaggctgttcgggcagtgaaattgagatcttgggcaaagggtggtgccata
ttaggcatcacttacagtctctttgcacaacgtgttagaagagcaaatgacgacaaggct
aagcagtctgccaaaatccttgttgacagacctaatctagtggtgctcgatgagggacac
actccccgaaatgatcaaacccgcatgtggaaagcattgtcgcgccttaaaacaaggaag
cgcattgttctttcgggaactgttttccaaaacaacctaagcgaactgtataacacgttc
tgcctggtgatgccgaggtttgaagagggagagccttcgacaatggacaatagggacaaa
gaagctaaaaaagcttggaatgcactgacaaaatccgttgaaagaatggaatacgtcagc
ccagagttaagagcattggtacaatcttatgcccatgtacatgaaggcaatgtccttgat
agccttcctgggtttaaggtctctatggtgatattggagccatctacattgcagaagaac
ctacttaaggtaattcatgaaaggagaaagaaccaatttgaattcgaatttggagtctcc
atggtctctgtccatccttcactgttccttaagattaaatttgaggcactgacagcacca
acaactgacaaggacgagttaaaaagactgaggctgaattaccatgctggtgtaaagacc
aaatttctagtagaactgattcggctttgtgaatctataaatgagaaagtactggtgttc
agccaatacatttcgccattgcggttagtgaagaaacaactggaatcccatttcagctgg
agtgaaaaggctgagatttcctatatcgatgggaaaatggattttaagctgcgacagtcc
ataatcaacgtcttcaacaatccttccagcaatgtgagggtattgcttgcttcacttaga
acctgttctgaaggaatcaaccttgttggggcttcaagggttgttttgcttgacattcat
tggaacccttctgttgagtggcaagcaatttcacgtgcatatagaattggacagaagaaa
attgtgtacatatacagactctttacacatgggacaatggaaagggaaaagtactctcgc
caagatgagaagcacaaaatgtctaaacttgtattttccaaatcaagctgtcacagtaat
cctcccaaaaccaaagtcagagaagatagaattttggaagagatggtccaacatgaaaaa
ctgaaggatatgtttgtggatatcgtttctgaaagagagaagtag
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