Cannabis sativa (hemp): 115722230
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Entry
115722230 CDS
T08987
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav00040
Pentose and glucuronate interconversions
csav01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
115722230
Enzymes [BR:
csav01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
115722230
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Mif2_N
Motif
Other DBs
NCBI-GeneID:
115722230
NCBI-ProteinID:
XP_030507246
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Position
9:2144335..2148892
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AA seq
442 aa
AA seq
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MAVSRRWVSVSVAVLLMFCFAGVMARVVRMDSRDEEGTEELQSLSNSTMASREEDVNHEH
AVENPDEVASMVEMEIHNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGF
GRNAVGGRDGRFYVVTDPKDDDPVNPRPGTLRHAVIQEEPLWIVFKRDMVIQLKQELIMN
SFKTIDGRGVNVHIANGACITVQFVTNIIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMSD
GDAVSIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTK
DKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYA
APTNRFAKEVTKRVETSAGVWKNWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKS
SSMVGTITSNAGALPCRRGHQC
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtctcggagatgggtttctgtttcagttgctgtacttctcatgttctgtttt
gctggagtaatggcaagagtagttcgaatggattcaagagatgaagaaggaacagaggag
ttgcagagcttaagtaactcaacaatggcttccagagaggaagatgtgaatcatgaacat
gcagtggaaaatccagatgaagttgcttccatggttgaaatggaaattcacaacagtact
gagaggagaaaacttggattcttctcatgtggaactgggaacccaattgatgactgttgg
cgttgtgaccccaattggcaaaagaacaggaagcgtttagctgattgtggtattggtttt
ggtagaaacgctgttggtggtcgtgatggtcggttctatgtggtcactgatcctaaagat
gatgaccctgttaacccaagacccggaactcttcgccatgctgttatccaagaagagcct
ctttggattgtgttcaagagagacatggttatccaattaaagcaagaactcatcatgaac
agtttcaaaactattgatggtcgtggtgtcaatgtccacattgctaatggagcttgtatc
accgttcaatttgttaccaacatcattattcatggtctccatatccatgactgtaaaccc
actggaaacgccatggttaggagctcaccctctcattttgggtggagaacaatgtctgat
ggtgatgccgtctcaatttttggatcaagccacatttgggttgatcacaactcactttct
aactgtgctgatggtcttgttgatgctgtcatgggctcaacagccattaccatttccaac
aaccacttcacccaccacaatgaggttatgctattgggacacagtgattcatacacaaaa
gacaagatgatgcaagttaccattgcctacaaccattttggagaaggtcttatccaaaga
atgccaagatgtagacatggatatttccatgtggtgaacaatgactacactcattgggag
atgtatgccattggtggtagtgctaatcccaccattaatagccagggtaacagatatgct
gctccaaccaatcgttttgcaaaagaggtaactaagagggtagagacatctgctggtgtc
tggaaaaactggaattggaggtcagagggtgatctcctattgaatggtgcctacttcacc
ccatctggtgcaggagcctcagcaagctatgctagagcctcaagcttgggagccaaatct
tcttctatggttggaaccattacttccaatgctggtgcacttccttgccgtagaggtcat
caatgctag
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