Clostridium saccharobutylicum: CLSA_c07400
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Entry
CLSA_c07400 CDS
T02876
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csb
Clostridium saccharobutylicum
Pathway
csb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLSA_c07400 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csb03019
]
CLSA_c07400 (recQ1)
03400 DNA repair and recombination proteins [BR:
csb03400
]
CLSA_c07400 (recQ1)
Enzymes [BR:
csb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLSA_c07400 (recQ1)
Messenger RNA biogenesis [BR:
csb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLSA_c07400 (recQ1)
DNA repair and recombination proteins [BR:
csb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLSA_c07400 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AGX41753
UniProt:
U5MMJ6
LinkDB
All DBs
Position
793992..795773
Genome browser
AA seq
593 aa
AA seq
DB search
MEIKDKIFYALKKYYGFDTLRRGQFEIIDSILNGRDTFCLMPTGAGKSICYQIPAIIMKG
ITIVISPLISLMKDQVDNLIEVGIKASYINSTQSINTIRNILIEASMGEYKIIYIAPERL
ESKIFLDMVNELEISQIAIDEAHCVSQWGHDFRNSYLGISKFCNMLKKKPIISAFTATAT
EEVRLDCIKLLGLKDPYIYKGDINRENLKLIILKEIDKVEELKSILRDNEGEAGIIYCAS
RKEVDSLHYYLKDLGFSVGKYHGGLNDDEKENYQEDFLYEKIDIIVATNAFGMGIDKSNV
RFIVHFTLPQNIESYYQEIGRGGRDGENCNCYLFYSESDISRVEYIINKSSSLNRREVHL
KKLQCMIDYCNLKECYRKYILNYFGNNQKINYCNNCSNCLNDDELKDFTKESQMILATVF
RTRERYGVSVLIDILKGFNGPKIIQNKLDKVTTYGIMKEYGTSFIRALIKSLLDEGYVSL
KEGTYSMLKLNSNSMKILKGEKNVVFKILDNEEPILNKELFEALRIWRKNKALRERIKPY
IIFSDTSLISISNTRPKTVNELLEVRGVGSKKIEAYGKEILNIVNGFKAHSKK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
gtggagattaaggataagatattttatgctttaaaaaaatattatggatttgatacttta
agaagagggcagtttgaaattatagatagtattcttaatggtagagatactttttgcctt
atgccaactggtgcaggaaaatctatatgttatcaaattcctgcaataataatgaagggg
ataactattgtaatatctccgttgatttcgcttatgaaagatcaagttgataatttaatt
gaagttggaatcaaagcatcgtatataaatagtacacaaagtataaatactataagaaac
atattgatagaagcatctatgggtgaatacaaaatcatatacattgcacctgaacggtta
gaatcaaaaatatttttagatatggtcaatgaacttgaaatttctcaaatagcaatagat
gaagctcattgtgtttctcagtgggggcatgattttagaaatagttacttaggaatttct
aagttttgtaacatgcttaagaaaaaaccgataatttcagcttttacagctacagccact
gaggaagttagattagactgcataaaacttttaggactgaaagatccatacatatataaa
ggggatattaatagagaaaacttaaaacttattatcttgaaagaaatagataaagttgaa
gaattaaaaagtatattgagggataacgaaggagaagcaggtataatttactgtgcttca
agaaaagaagttgatagtttacattattatttaaaagatttaggatttagtgttggaaaa
tatcatggtggacttaatgatgatgaaaaagaaaactatcaagaggactttttatatgag
aaaatagatataatagttgcaacgaatgcttttggtatggggatagacaaatctaatgta
aggttcattgtacattttacacttcctcaaaatatagaatcttattatcaggaaataggt
agagggggaagagatggggagaattgtaattgttatttattctactcagaaagtgatata
agtagagttgaatatataataaataaaagttcttcattaaatagaagagaagtacatctt
aaaaaattacaatgtatgattgactattgtaatttaaaggaatgctatagaaaatatata
ttaaattatttcggaaataatcaaaaaataaattattgcaataattgcagtaattgctta
aatgatgatgaattaaaagatttcacaaaagaaagtcaaatgattttagctacagttttt
agaacaagagaaagatatggtgtatcagttcttatagatattttaaaagggtttaatggt
cctaaaataatacaaaataaattagataaagttacaacctatggaataatgaaagagtat
ggaacgtcattcataagagctttaattaaaagtttattagatgaaggttatgttagctta
aaagaaggaacatattcaatgttaaagttaaactcaaattcaatgaaaatattaaaggga
gaaaaaaatgtagtatttaagatattagataatgaagaacctattttaaataaagaatta
tttgaagctttaaggatatggagaaaaaataaagcgcttagagaaagaattaaaccatat
ataattttttctgatacaagtttaatttcaatttcaaacactagacctaaaaccgtgaat
gaattactagaagtcagaggcgttggaagtaagaagattgaagcctatggaaaagagata
ttaaatatagttaacggatttaaggcacattcaaaaaaataa
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