Caldicellulosiruptor saccharolyticus: Csac_1206
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Entry
Csac_1206 CDS
T00506
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csc
Caldicellulosiruptor saccharolyticus
Pathway
csc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Csac_1206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csc03400
]
Csac_1206
Enzymes [BR:
csc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Csac_1206
DNA repair and recombination proteins [BR:
csc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Csac_1206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABP66809
UniProt:
A4XIS4
LinkDB
All DBs
Position
1370380..1373811
Genome browser
AA seq
1143 aa
AA seq
DB search
MLKIFEKLDEFLKIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQKSKS
EWEKRFKNLFDKVIVLQERENPLINSFAKSKDSEIQRAEEFVRIFEEGFDVLILSPQNLL
EKYSDFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKGQFSQKGGIVDIYPIFSK
YPVRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDLSIDFSDGIKKIVADFKKL
QNKLKGDARKNLEESFKDVIDGAELKIDRLYPYYYQNFRSIFDIFGDCFVIIDEYTQVYG
SLKTFEEQTEDLYKDLLEKGYVLTKMAGCYFKVYDILEKLSSSIILQTFAQSIKEIQVKD
IFSFNNLREIPSYNGQKELLIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKSRIEFNK
ADEVLTDRQGVYLLPRSVEKGIEIQNLKWVCLSFFNVEKKKGKDVKKRPKSKKETFYTIE
DLKYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYANNSYLYVPTTNLDVIEKYIGT
DDSEPKLSKLGTLEWQKQKQKVRKSLEVVAKDIVELYAKRQLKKGFKFSPDTIWQKEFEE
KFPYTETEGQLQAIEEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFVQRMKDFPITIEVLSRLKSESQQKKILKALKDGTIDIIIGTHRLLS
NDVKFKDLGLLIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSI
IEDPPEDRFPVQTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGE
DIKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLA
QLYQLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDLEIRG
AGSIVGKLQHGHINAVGYDMYIRLLSEEIRRLKGEEIQPEIEPQIDIRVNAYISSEYIDD
DKERINMYKKISSIDTKEDVQEIYDELIDRFGDIPKEVDNLIKIAYIKFLCKRLGILSIS
QNDSEKVKLQFVAQENILLIKTLLCEKGILYSEGKDGTLIFSLSKDSLDFLVNLLEDLVE
KVC
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaaaatttttgaaaagcttgatgaatttttgaagattgaaaaagcaatttcaaaa
aagagccttcccatacttgtcacaaaccttggcgaaatggggaaggccctcttggtccat
gcaatatgtcaaaaatttaacaaaaaggttctctttataacgcatcaaaaaagcaaaagc
gagtgggaaaagaggtttaaaaatctttttgacaaggtaatagttttacaagagagagaa
aatcctcttataaactcatttgcaaagagcaaggattctgagatccaaagagcggaggag
tttgtcagaatttttgaagaaggatttgatgtgcttattttaagccctcaaaatttgctt
gaaaagtattctgattttaagtttgagtctctcatccttgaagagaacaaggagttaggc
tttgaggaatttttaaccacacttacaaggtatggttatgaaagagttaaggttgttgag
aaaaaaggtcaattttcccaaaaaggtggaatagtagatatataccctattttcagcaaa
taccctgttagaatagaattctttggtgatacaattgacactataaggtattttgatgtt
gagactcaaaagtcgtttgaaagggtctgttatgtaaagatttataaagcttgtgagtgg
gatttaagtattgacttttcggatggtattaaaaagatagtagcagattttaaaaaactt
caaaacaaactcaaaggtgacgcaagaaaaaacttagaagaaagtttcaaagatgtaata
gatggagctgaactcaaaattgatagactatatccctattattaccaaaattttaggtcc
atttttgatattttcggcgattgctttgttataattgacgagtatactcaggtttacggc
agcttgaaaacttttgaagagcagactgaagatctttacaaagaccttttagaaaaagga
tatgttctgacaaaaatggcagggtgctatttcaaagtctatgacatattggaaaaactt
tcctcttcaattatccttcaaacgtttgcgcaaagcataaaagagattcaagtaaaagat
atcttttcttttaataatctccgggagattccttcatacaatggtcaaaaagaactttta
atagaggatataaagtattaccagtcaaagggttatttgataaatgtctttgctggaagt
gagacttcactcgaggatttaaaatcagaacttgaaaagagtagaatagagtttaacaag
gcagatgaagttttaacagatagacagggagtttatcttcttccacggtcggttgaaaaa
gggattgaaatacaaaacttaaaatgggtttgccttagctttttcaatgttgaaaagaaa
aaaggaaaagatgtaaaaaaaaggccaaaatcaaaaaaagaaacgttttatacaattgaa
gacttaaaatacggaagctatgttgttcataggacatatggtataggaaaatttttggga
tttgagaagatcactgttgagggtgtgacaaaagaatatttgaaacttgaatacgctaat
aactcttacttgtatgtgccaaccactaacttggatgtaattgagaaatatataggtact
gatgattcagaacccaaactctcaaagcttggaactttagagtggcaaaaacaaaaacaa
aaagtcagaaagtcacttgaggttgtggcaaaagacatagttgagctgtatgcaaaaagg
cagctcaaaaaaggttttaagttctcgcctgacaccatctggcaaaaggagtttgaagaa
aagtttccgtacaccgaaacagaaggccagcttcaggcaatcgaggagattaaaaaagat
atggaaagcgaaaagccaatggacaggattctttgtggtgatgttgggtatggcaagaca
gaagttgctatgcgcgcagcatttaaagctgtgatggactcaaagcaggtagcggtgctt
gttccaactacaatcttggctcagcagcactatatgacatttgtacaacgaatgaaagat
tttccaataacaattgaagtgctttcgcgtttaaaaagtgagagccagcaaaagaagata
ttaaaagctttaaaagacggtacaattgatataattattggaactcatagacttttatca
aatgatgtaaagttcaaagacttagggcttttgattattgacgaggagcacaaatttgga
gttgaacacaaggaaaagataaaaaaattaaaagaaaatgtggacgttttgactcttaca
gcaacaccgattccaaggacacttaacatggcacttttgggtataagagatttgagtatt
attgaagacccaccagaagacaggtttcctgtgcagacttttgtcatggagtacaatgaa
aaggtgataaaagaagcaatcttaaaagaggtttcaagggggggtcaagtattttacctt
tacaacagggtaaaagatatagaagaagtggtaaataggcttcaagcacttttaggggaa
gatatcaagattgcctatgcgcatggtcagatggatgaaagacaattagaagaggtgctt
attgactttataaacggcaaatatgatgtacttgtctgcacaacaataattgaatcaggt
gttgatatgccaaatgtcaatacactcattgtggaggatgcagacagacttggtcttgcc
cagctttaccagcttcgtggaagggttgggcgatcaaacaagcttgcgtatgcatatttc
acattcagaaaagacaaagtgctttctgaggaggctgcaaaaaggctttctgctataaag
gagtttacagagctgggctcaggttttaagattgcaatgagagaccttgaaataagaggt
gcaggctcgattgtggggaagctccaacatgggcacattaatgctgttggttatgacatg
tatataagacttttgtcagaagagattagaaggctcaaaggcgaagagatccagccggag
attgagccgcagatagatataagggtaaatgcttatattagtagtgaatatatcgatgat
gacaaggaaagaattaacatgtacaagaagatttcttctattgatacaaaagaagatgtt
caagaaatctatgatgagcttattgaccgatttggagatattccaaaagaggttgacaat
ctcataaaaattgcttatattaagttcctctgcaaaagattaggaattctctctatttca
caaaacgatagcgaaaaggttaagttacaatttgtggcccaggaaaacattcttttgatc
aagaccttgctttgtgaaaaaggtattttatacagcgaaggtaaagatggcacattgata
ttttctttgtcgaaagattctttggactttttagtaaatcttttggaagatttagttgaa
aaagtttgctga
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