Caldicellulosiruptor saccharolyticus: Csac_1285
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Entry
Csac_1285 CDS
T00506
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
csc
Caldicellulosiruptor saccharolyticus
Pathway
csc02020
Two-component system
csc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
csc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Csac_1285
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Csac_1285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csc03021
]
Csac_1285
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
csc02035
]
Csac_1285
Transcription machinery [BR:
csc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Csac_1285
Bacterial motility proteins [BR:
csc02035
]
Flagellar system
Flagellar assembly proteins
Stator
Csac_1285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
Sigma70_ECF
HTH_37
HTH_28
GerE
UPF0122
HTH_38
HTH_24
HTH_5
HTH_29
HTH_3
HTH_17
MarR_2
HTH_Tnp_ISL3
HTH_6
KORA
HTH_10
Rv2175c_wHTH
Phage_terminase
HTH_50
UPF0175
HTH_AsnC-type
PCI
TnsD
MarR
DUF134
Motif
Other DBs
NCBI-ProteinID:
ABP66887
UniProt:
A4XJ02
LinkDB
All DBs
Position
1448849..1449619
Genome browser
AA seq
256 aa
AA seq
DB search
MTAKFLRGICTMDEAFLWEKYSKTKDPKIKEQLTLRYMPLVKLIAGRMAMYFGGNVEYDD
LVSYGSLGLLDAIEKYDSQKGVKFETYAYTRIRGAIIDCVRSQDWVPRSIRQKAKEVEKA
YIEIEKEGKIPTDEEVAKRTGLTLSEFQKLKEKISSGMILSLEGFLEQNYEIKIGGLEDF
VSHPEVFIENEELKEVLRQEIENLSENEKMVILLYYFEELSIKEIAKILGVSESRVSQLH
TRALLKLRAKLEKHLG
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgacagctaaatttttaaggggaatttgtacaatggatgaggcatttttgtgggaaaag
tactcaaagacaaaagatccaaaaataaaagaacagcttacacttagatatatgccactt
gtaaaactcattgcaggcagaatggcaatgtattttggtggaaatgttgagtatgatgat
ttagtcagttacggctcacttggccttttagatgcaattgaaaagtacgacagtcaaaaa
ggtgttaaatttgaaacatatgcatatacacgcataaggggtgctattattgactgtgtc
agaagccaggattgggtgccgagaagcatcagacaaaaagcaaaggaagtagaaaaggcg
tatattgaaatagaaaaagaaggtaaaataccaacagatgaagaagtagcaaaaagaaca
ggccttactttatcagagtttcaaaaacttaaagaaaaaataagtagcgggatgattctt
tcacttgagggttttcttgaacaaaactatgagataaaaataggcgggcttgaggacttt
gtttctcatccagaagtatttattgaaaatgaggagctaaaagaggtgctcagacaagaa
atagagaatctttctgaaaacgaaaaaatggtgattcttctttattattttgaagaactt
agcataaaagagatagccaagattttaggcgtttctgagtcaagagtaagtcagcttcac
acacgagcgttgcttaaactgcgagcaaaattggaaaagcatcttggctga
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