Cynoglossus semilaevis (tongue sole): 103383179
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Entry
103383179 CDS
T04866
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103383179
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103383179
09142 Cell motility
04820 Cytoskeleton in muscle cells
103383179
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
csem00535
]
103383179
Proteoglycans [BR:
csem00535
]
Extracellular matrix (ECM) proteoglycans
Others
103383179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103383179
NCBI-ProteinID:
XP_008314435
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Position
9:complement(179860..190743)
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AA seq
686 aa
AA seq
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MAASRIYRESLLVFFLQVLLICSAQRGPVGPRGPQGPPGAAGVPGVDGIDGDRGVDSTVV
GGPGPDGDNGRDGAPGAAGLPGADGPLGPPGDAGPVGLKGPKGEPGPRGPPGEPGVGPDG
LDGIPGTDGLPGELGHVGAPGARGRRGSVGLPGAAGPRGPPGVYQGEDLCPNACPSALTG
HPGLHGMKGHKGVMGESGEPGRQGHKGEEGDQGLMGDVGAQGLPGPGGPRGLPGIIGSKG
DRGPRGAPGDVGPRGGQGGPGDRGRRGAVGELGPKXPLGDPGPQGIRGVPGPKGEPGLPG
PDGREGIPGLPASKGLPGKNGAPGDAGLPGFSGVPGAYGPKGHSGVKGVSGDPGVVGLMG
SPGKEGERGEQGEVGPVGPRGGPGARGERGPEGPIGLPGARGTKGDPGLPGLPGPAGYLG
QKGERGAVGLDGPKGDQGAPGAEGVAGERGDLGEQGEPGEKGSTGPPGETGSKGPEGGRG
QPGEEKLGQPGPRGMQGDTGVPGLPGTQGRQGKTPTDSHIKQVCMRVMQEQLAQLAASLT
RPESGIAGLPGPPGPPGPTGPAGENGFPGHTGSRGLPGLKGPPGVIGRKGPKGDQGDTGD
RGPTLRGPKGEPGAPGLPGNPGRPAYGKDGRDGERGPRGTPGIPGVPGSPGTAGLNGYCE
PSQCVLPMVASPVSAKDSSMKGPSEM
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtccaggatctatcgggaatccctgctggtgttttttctgcaagtcctgctg
atttgctctgctcagaggggcccggtcggtcccaggggccctcaggggccaccaggagca
gctggcgtaccgggggtggacggcattgatggtgacagaggagtggactccacagtggtc
ggtggaccaggccctgacggtgacaacggcagagatggagcacctggagctgcaggcctt
ccaggcgcagacggaccgcttggaccaccaggagacgcaggaccagtgggtttgaaggga
cctaagggagaacctggtccacgtggacctcctggagaacctggtgtcggaccagacgga
ctggacggtattcctggtacagatgggcttccaggagagttgggccacgtcggcgctccc
ggggcgaggggaaggagggggtcagttggtctgcctggagctgcaggacctcggggacct
ccaggagtgtatcaaggagaggacctgtgtcccaacgcctgtccctctgctttgactgga
catcctggtcttcatggcatgaagggtcacaaaggagtcatgggtgaatctggtgaaccc
gggcgtcaaggtcacaagggagaggaaggagaccaagggctgatgggagacgtcggcgct
caaggactaccaggtccaggtggaccgagaggccttccaggaataataggctcaaaaggc
gatcgggggcctcgtggtgcacctggggacgtcggcccccgggggggccagggaggcccg
ggagacaggggtcgaagaggggccgtgggtgagctggggcctaaatgacccttaggggat
ccaggtccacaaggaatcagaggggtgccaggtccaaagggagaaccgggtttaccaggt
cctgacggacgtgagggaattcctggactgccagcatccaaaggtcttccagggaaaaac
ggggctccaggtgatgctggtctaccaggattttctggtgtaccaggagcttatggacca
aaggggcacagtggtgtgaagggggtgtcaggtgacccaggagtggtggggctgatgggc
tctccagggaaagaaggggagcgtggtgagcagggagaagttggaccggtcggacccaga
ggaggaccaggtgcaaggggagaacgagggcctgaaggaccaatcggattaccaggagcc
aggggtaccaaaggagacccaggcctcccaggcctccctggtcctgctggatatctgggc
cagaaaggagaacgaggtgcagttggtcttgatggacccaaaggtgaccagggagctcca
ggtgccgagggagtggcaggagaacgaggagacttgggcgaacaaggagaacccggagag
aaaggatcgacggggccgccaggagagacaggaagtaaaggacctgagggtggaagagga
cagccaggggaagagaagctgggtcaaccaggaccaaggggcatgcagggtgacacaggg
gtaccaggtctgcctggaacccagggtcgacagggaaaaacaccaacagattcacacatc
aaacaggtctgcatgagagtaatgcaagagcagctggcccagctagcagccagtctgacc
aggcctgagtcaggcatagctggactgcctggtccccctggtccacctggacctacaggc
cctgctggggagaacggattccctggacacaccggatcaagaggacttcctggtctaaaa
ggtcctcctggggtaatcggacgcaaaggacccaaaggtgaccagggtgacacaggagac
agaggaccaacactcagaggaccaaagggagagcctggtgcccctggtctgccaggtaat
cccggtcggccggcctacggcaaagatggccgcgatggagagcggggccctcgcggtact
cccggtattcctggtgttcctggctcacctggtacagccggtctcaatggctactgtgaa
ccttcgcagtgtgtcctgccgatggtggcgtcaccggtttcagcaaaggactccagcatg
aagggacccagtgagatgtga
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