Cynoglossus semilaevis (tongue sole): 103385425
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Entry
103385425 CDS
T04866
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103385425 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103385425 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103385425 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
csem00535
]
103385425 (col9a3)
Proteoglycans [BR:
csem00535
]
Extracellular matrix (ECM) proteoglycans
Others
103385425 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103385425
NCBI-ProteinID:
XP_008317531
UniProt:
A0A3P8X442
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Position
10:18742796..18756078
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AA seq
678 aa
AA seq
DB search
MAAFSALWMLLLFQLLASSLSQRPGPRGAPGPPGPGGPPGRDGTDGKPGPAGLPGKSGPK
GKSGIPGVAGKPGLPGLPGVDGLTGVDGPAGKDGAPGEAGEPGPSGPPGPPGRGRPGAAG
LPGTNGLPGGLGPQGPVGAEGLPGLPGPAGPDGPPGLPGTLHDLNGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGNKGEPGKDGEKGDAGPPGPPGIPGTVGLQGPRGLRGLQGPMGGVG
DRGLPGFRGKPGVAGIIGKTGDAGEKGPQGFRGPKGEVGKIGPKGTPGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDAGRHGVVGEKGPNGLPGLQGKAGVKGSKGEVGDPGKSGETGPSG
EPGIPGDIGVPGERGVAGPRGVAGGIGPAGNPGPQGVKGFQGVKGALGDPGLPGPTGVRG
EFGERGPVGASGAKGDMGVAGSDGLPGENGEPGPFGPVGQKGGAGKPGELGPKGVTGPQG
ELGARGAPGKPGLMGLQGEQGMPGIAGKTGVPGKLTSEQHIRELCGSMIDDQIAQLAANL
RRPLAPGLVGRPGPAGSPGQPGVAGSIGHPGARGPPGYRGLPGELGDPGPRGDVGEAGDK
GPIGKAIDGPTGDQGSQGLPGVPGIVKDGRDGSPGDPGESGESGRVGRTGHQGPPGICDT
SACQGAAPVGKSSNPKNY
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctctgctctttggatgctcctgctgttccaactgttggcgtcatcactg
tctcagagaccaggtcccagaggagctccaggacctccaggaccaggaggaccaccagga
cgggatggcactgatggcaaacctggaccagccggactcccagggaaatcaggtcccaaa
ggaaagtcaggaattccaggagtagcgggaaaaccaggtctgccaggacttccaggggtc
gacggtttgactggtgtcgatggtcctgctggtaaagatggagctcctggagaagcgggt
gaacctggaccttctggaccaccaggacctcctggcagggggcgccctggagctgcagga
ttaccagggaccaacggtttaccaggaggactgggtcctcagggtccggtgggagctgag
ggtcttccaggtcttccaggacctgctggccctgacggacccccgggtcttcctggaact
cttcatgatctcaacggtgaccttctgtgtcctgcaatctgcccacccggtccatctggt
ccacctgggatgccaggatttaagggtcacacaggtcacaaaggaaacaaaggagaacca
ggaaaagatggagaaaagggtgacgctggtccacctggtcctccaggtattcctggtact
gtgggtctgcagggcccacgtggactgcgaggtttgcagggacccatggggggagtaggg
gacagaggtctgcctggtttcaggggaaaacccggagtcgctgggatcattgggaagaca
ggcgacgctggtgaaaaaggacctcagggatttagaggacccaaaggagaagtgggtaaa
attggaccaaaaggaacaccaggaggagcaggacctaaaggcgaacctggtattccaggc
agagatggtaaagacggtacaccaggactagacggagaaaagggtgatgctggacgtcat
ggtgtggttggagaaaaaggaccaaacggacttcctggtctacaaggaaaggctggagtg
aagggatctaaaggagaagtgggtgatcctgggaagtctggagagacgggaccctctgga
gagccaggtattcctggtgacatcggtgtcccaggagagaggggggtcgctgggcccaga
ggagtggctggaggaatcggaccagcaggaaatcctggacctcagggagtcaagggattt
cagggggtaaaaggagccttgggggatccaggtctcccaggtccaacaggagtccgtgga
gagtttggtgaaaggggtccagtgggggcatcaggagctaaaggagacatgggagtcgca
ggaagtgatggtctaccaggagagaatggagaacctggaccttttggaccagtgggacag
aaaggaggggcaggaaaaccaggggaactgggtccgaagggtgtgactggtccacagggg
gaacttggtgccagaggagctccaggaaaaccaggactaatgggtctccagggagaacag
ggaatgcctggaattgcaggaaagaccggcgtacctggtaaactgaccagtgagcagcac
atcagggagctgtgtgggtcgatgatcgacgatcagatcgcacagttggccgctaacctg
cggagacctctggctcctggactggtcggtcgtccaggtcctgctgggtctccaggacag
ccaggagtcgctggttctattggacatccgggagcccgcggaccaccggggtacagaggt
ctgccaggagaactgggagaccctggtcccagaggtgacgttggtgaggccggggacaag
ggacctattggaaaagccatagatggacctactggagatcaaggatcccaaggtcttcca
ggagtacctggaattgtcaaagacggtcgtgatggttctccaggagatccaggtgagtct
ggagaatcaggcagggtgggcaggaccggacaccaaggacctccaggaatctgtgacacg
tcggcctgtcagggagcagcacctgttggaaagtcctccaaccccaagaactattaa
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