Cynoglossus semilaevis (tongue sole): 103394184
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Entry
103394184 CDS
T04866
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
csem
Cynoglossus semilaevis (tongue sole)
Pathway
csem04510
Focal adhesion
csem04512
ECM-receptor interaction
csem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103394184
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103394184
09142 Cell motility
04820 Cytoskeleton in muscle cells
103394184
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
csem00535
]
103394184
Proteoglycans [BR:
csem00535
]
Extracellular matrix (ECM) proteoglycans
Others
103394184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
103394184
NCBI-ProteinID:
XP_008329597
UniProt:
A0A3P8W2V0
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All DBs
Position
18:complement(6291908..6310814)
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AA seq
949 aa
AA seq
DB search
MAFHCSAVVRKQQLWMSAYSTVSMAAMLLPLLLAPALGQLDLNRLDGDSVCPPIRSGQDD
LPGFDLITQFQLDVISLKGVRKVEGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
VTFRMIKNTVNKVWNIWQIVDEEGHKQAGLRLNGDQQALEYFLMGAEGYLQTVTFPGLSV
LFNTKWHKVMIGVEYEMVTLYVDCQPVDQKPIKGKGPVNTEGDTLIGRLDSDPDASVVFE
LQWMLIHCDPKRAQRESCNELPATEMYANAEPDKTVQGPPGAPGPQGIPGDPGEDGRDGR
DGLPGSPGSPGNSGSKGEQGEIGLPGQRGLPGLPGNPGPAGPMGPRGPVGERGLPGFPGP
AGVPGPASEGPAGPPGKPGTPGDEGNIGPEGPPGPRGNPGTGGVPGPPGPPGPVGPPGAS
NEGSGDPCPAACPAGPQGMAGLPGMKGHKGVAGEPGKDGIPGAKGEAGAAGAQGPPGRIG
DDGQRGPIGLPGSSGEKGDRGLPGFNGVPGPTGPPGAPGTEGIRGRQGLQGDKGDDGALG
PKGEQGSQGEKGDIGEPGKDGMSGIPGVDGAKGDPGTPGAVGIRGIVGIPGLPGKQGVVG
PPGEKGETGADGPTGPVGLPGKTGEPGKHGKDGKQGDKGSTGETGKQGPVGPAGPPGIQG
HTGEKGDAGERGIKGHPGYKGDQGPMGPEGQKGSPGDPGTAGDSGVKGDQGPPGIPGIKG
ERGDKGLRGATGPDGRPGRPGHEGLSGPMGAPGLEGEQGLPGTPGPRGLPGPKVNDEKLR
EICSAVVEEQLTEFRKELLRRPAALGAPGKAGAAGPPGPPGPAGEAGAPGAQGLMGPKGP
PGYFGLPGAPGKKGDVGEKGDMGEKGEDGVGIKGSPGVPGAPGTPGVPGIGKDGKNGERG
ETGSPGVPGAPGSRGSAGPPGLCDPSTCISRMPPLYMVSGKKSAGYKNP
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccttccactgctctgcagtcgtcagaaaacagcagctatggatgtcagcgtactcc
actgtctccatggctgccatgctgctgcccctcctcctagctccggctcttggacaactt
gatctcaaccgactggacggcgatagcgtctgtccaccaatcagaagcggacaagatgac
cttccaggtttcgacctcatcactcagttccagctggatgtcatatctctgaaaggtgtg
aggaaggtggagggctccactcccctccaggtggcgtaccgcctcgacagagaggccaac
ttccaaataccaactatgcttaacttccctcggggcttcccagatgagtattccttcatg
gtgactttccgcatgatcaagaacactgtgaacaaggtgtggaatatctggcaaatcgtg
gacgaagaaggtcacaaacaggccggtctgaggctgaatggagaccagcaggccctggag
tacttcctgatgggtgccgaaggctatctgcagaccgtcaccttcccaggactgtcggta
cttttcaacaccaagtggcacaaggtaatgatcggcgtggaatacgaaatggtcactctg
tacgtggactgccagccggtggatcaaaaacccatcaagggcaaaggacctgtcaacacg
gagggggacaccctcatcggccgcctggattccgaccccgacgcctctgttgtgtttgag
ctccagtggatgctgattcactgcgacccaaagagagcccagagagagagctgcaacgag
ctgcctgccactgagatgtatgccaatgctgagcctgataaaacagttcaaggcccacca
ggagctccaggccctcagggcattccaggggatccaggtgaagatggcagggatggcaga
gatggtcttccagggtctcctggcagtccaggcaattctggcagcaaaggggagcaaggg
gagatcgggcttcccggacagagaggccttcctggtcttcctggaaatcctggtccagct
ggtccaatgggccccaggggacctgtgggagagaggggccttccaggttttccaggacct
gcaggtgttcctggaccagccagtgaaggacctgctggaccaccaggaaaacctggaacc
cctggagatgaaggaaacatcggccctgagggtccacctggaccgagagggaacccaggt
accggtggtgttcctggtccacctggtccacctgggcctgtgggaccgcccggtgccagc
aatgagggaagtggggacccttgtcctgctgcctgtcctgctggacctcaggggatggct
ggactaccggggatgaagggtcacaaaggtgtggctggtgagcctggaaaggatggaata
cctggagcgaagggagaagccggagcagcgggtgcacagggaccaccaggtcgcatagga
gatgacggccaaagagggccaataggacttcctggaagctctggggagaagggagacaga
ggtcttcctggtttcaatggtgtcccaggaccaacaggcccacctggagctcctggcaca
gagggaatccgtggacgtcagggattgcaaggagataagggtgacgatggtgctctggga
ccaaagggtgagcaaggaagtcaaggggaaaaaggagatattggggaacctggaaaagat
gggatgagtggaattcctggagttgatggtgctaagggagatcctggtactcctggtgct
gttggtataagaggaattgtgggtattccaggcctgcctggaaagcagggagttgttgga
ccccctggtgagaagggtgaaactggtgcagatggacccacggggcctgttggacttcct
ggaaagactggtgagcctgggaaacatggaaaagacgggaaacaaggagataaaggatca
acgggtgaaacgggaaaacaaggcccagtgggacctgcaggtcctccaggaatccagggt
cacacaggagaaaaaggtgatgctggtgagaggggaatcaaggggcatcctgggtacaaa
ggagatcagggacctatgggaccagaaggtcaaaaagggagtccgggagacccaggtaca
gctggagattctggtgtaaagggagaccagggtcctccgggaattcctggaatcaaagga
gagcgtggagataaaggccttagaggagccactggtcctgatggtagaccaggtcggcca
ggtcatgagggtttgtccggtccgatgggggccccaggcctggagggagaacaaggcctt
cctggaacaccaggacccagaggtctacctggcccgaaagtgaatgacgagaagttacgg
gaaatctgttcagctgtagtggaagaacaactgactgagttcagaaaggagcttctaaga
cgaccagcagccctcggtgcccctggtaaagcaggagcagcaggacctcctggacctcca
ggaccagccggagaggccggtgcaccaggagcccaagggctcatgggtcccaaaggtcca
ccgggctatttcggactaccaggtgcacctggaaaaaaaggtgatgtcggggaaaaggga
gacatgggagaaaaaggagaagatggtgtcggaatcaaaggcagcccaggcgttccaggt
gcaccaggcacaccaggggtccctggtatcggcaaggacggcaaaaatggagaacgtggt
gaaacagggagtcctggcgtaccgggtgcacctggctcacggggatctgcaggaccacct
ggcctttgcgacccatcgacctgcataagccgaatgccacctctctacatggtcagtggc
aagaaatctgccggctacaagaacccgtga
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