Clostridium septicum: CP523_07145
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Entry
CP523_07145 CDS
T06069
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csep
Clostridium septicum
Pathway
csep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP523_07145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csep03019
]
CP523_07145
03009 Ribosome biogenesis [BR:
csep03009
]
CP523_07145
Enzymes [BR:
csep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CP523_07145
Messenger RNA biogenesis [BR:
csep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CP523_07145
Ribosome biogenesis [BR:
csep03009
]
Prokaryotic type
rRNA helicases
CP523_07145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
NAT10_TcmA_helicase
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AYE34243
UniProt:
A0A9N7JKE7
LinkDB
All DBs
Position
1630499..1632076
Genome browser
AA seq
525 aa
AA seq
DB search
MKEIKFSDLGLKDTLLKSINELGFEKPSQIQSEAIPVALEGNDLIGQAQTGTGKTAAFGC
GIINNIDAKDGLSAIILAPTRELAIQVNDELTRLSKYDHLNILPIYGGEPITHQIRALKR
NVNIVVGTPGRVLDHIKRKTLSLSTVRFLVLDEADEMLNMGFIDDLEDIIKELPEERQTL
LFSATMPPQIKRLAKRYMKKDAKHIAIQKSAMTVSKIKQHFFEVAPKTRFEALCRILDFD
NPSSAIIFCKTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNFLIATD
VAARGIDVEGVTHVINYDLPQDVESYVHRIGRTGRANREGTAYSLIAPKEFSMLKQIKSV
TKGDITKKSVPTVDEIFSNKSQSMIDDVDATLKKADYDKFIPVAVELNQKYDSVEIIAAL
IKSKFNDELLSTYTSNVLEAPKSEDVRLFFSVGRRDGINPKSLVNFIKDTARIKASAIGD
IDILENFAFVNVTPDVQKKVMDKCIGLKLNKRKVNIEVANKKKRR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaattaaatttagtgacttagggcttaaagatacccttttaaaatctattaat
gaattaggttttgaaaaaccatctcaaatacaatcagaagctattcctgtagcacttgaa
ggaaatgaccttataggtcaagctcaaactggtactggtaagacagctgcatttggttgt
ggaataattaataatattgacgctaaagacggacttagtgctattattcttgctccaaca
agagaattagcaattcaagttaatgacgaacttacaagattatctaaatatgatcattta
aatattttaccaatttacggaggagaacctataactcatcaaataagagctcttaagaga
aatgttaatatagtagttggtactcctggtagagttttagaccatattaagagaaaaaca
ctttctctatcaactgttagattcttagttttagatgaagcagatgaaatgttaaacatg
ggctttatagatgatttagaagatataataaaggaacttcctgaagaaagacaaacttta
ttattctcagctacaatgccaccacaaattaaaagattagctaagcgctacatgaaaaaa
gatgctaagcatattgctattcaaaaatcagctatgacagtttcaaaaataaagcaacac
ttctttgaagttgctccaaagacaagatttgaagctctttgtagaatattagatttcgat
aatccatcttctgctataatcttttgtaaaacaaagaaaggcgtagatgaattagttgaa
ggtatgcaatcaagaggatatgttgttgaaggtatgcacggagacatgtcacaagctcac
agattaagaactttaaagaaatttaaagaagggtcattaaacttcttaatagctactgac
gttgctgctagaggtatagacgttgaaggtgtaactcatgttataaactatgatttacca
caagacgttgaaagctatgttcacagaataggtagaacaggtagagctaatagagaaggt
actgcttattctttaatagcaccaaaagaattttctatgttaaaacaaataaaatcagtt
actaagggagatataactaagaagtcagttcctacagtagatgaaatattctcaaataaa
tcacaatcaatgattgatgatgttgatgctacattaaagaaagctgattacgataaattt
ataccagttgctgttgaattaaatcaaaaatatgattcagtagaaataattgcagctctt
ataaaaagcaagtttaatgatgaattattatcaacttatacttcaaatgttctagaggct
ccaaaaagtgaagatgttcgtttattcttctcagtaggtagaagagatggaataaaccca
aaatctttagtaaactttataaaggatactgctagaataaaagcttctgctattggcgat
atagatatattagaaaactttgctttcgttaacgttactcctgatgttcaaaagaaggtt
atggataaatgtataggtcttaagttaaataaaagaaaagtaaatatagaagtagctaat
aagaaaaagagaagataa
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