Coccinella septempunctata (seven-spotted ladybird): 123312572
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Entry
123312572 CDS
T07873
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cset
Coccinella septempunctata (seven-spotted ladybird)
Pathway
cset03008
Ribosome biogenesis in eukaryotes
cset03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cset00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
123312572
09123 Folding, sorting and degradation
03018 RNA degradation
123312572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cset03019
]
123312572
03009 Ribosome biogenesis [BR:
cset03009
]
123312572
03016 Transfer RNA biogenesis [BR:
cset03016
]
123312572
03036 Chromosome and associated proteins [BR:
cset03036
]
123312572
Messenger RNA biogenesis [BR:
cset03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123312572
mRNA degradation factors
5'-3' decay
5' exonucleases
123312572
Ribosome biogenesis [BR:
cset03009
]
Eukaryotic type
Pre-60S particles
RNases
123312572
Transfer RNA biogenesis [BR:
cset03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
123312572
Chromosome and associated proteins [BR:
cset03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123312572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
T9SS_plug_1st
Motif
Other DBs
NCBI-GeneID:
123312572
NCBI-ProteinID:
XP_044753010
LinkDB
All DBs
Position
4:complement(3314225..3321772)
Genome browser
AA seq
1593 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEFVKEHQIPEFDNLYLDMNGIIHNCSHPDDGNAHFRITEEKI
FEDIFHYIEALFRMIKPLKVFFMAIDGVAPRAKMNQQRGRRFRSAKDAQKLEDEAIKRGE
VLPPEPSFDSNCITPGTEFMARLHEQLKYFVVKKISEDPLWQRCKVIYSGHETPGEGEHK
IMDYIRYMRSQPGYDPNTRHCLYGLDADLIMLGLCTHDPHFSLLREEVKFGKKATKKTAT
PEEVRFALLHLSLMREYLELEFDPLKRTLKTFKFDIEKIIDDWVLMGFLVGNDFIPNLPN
LHITDGALPILYKAYMEILPELDGYINEAGILNLERFEIFMKKLGEIDVQNFEEVKEDLF
YFRQKTGRKLQPFAKNNTKLKHMEFWKPEGNEEDINPDLLEPLEGGNTPRDSGLSDLIAR
TEEEYVDEEDEEEDIISSDENDELEFEDYKRSYYMNKLEYEKVTPEVMKSQAEGYVRAIQ
WNLHYYYNGVCSWSWYYPHHYAPYISDIKNFKNLNLEYDLGKPFLPYEQLLAVLPAASKR
LLPSCFQNLMTSETSPIIRYYPEKFETDLNGKKQEWEAVVLVPFIDENILLEAMRSCSDQ
LTSTEAARNRHSPMLCYTYTQENLGQYDSPMYFPDISNNHAKVQPITIDEIKVPREKLVK
GAYPGVLMDVYYPGFPTFKHLEHQGQLEKARVNVFGQASRGENMIIRIIPSERVLDGELP
VNLLNKTVYVGYPHLTEAKVVSISNSKQKLTYAGVDREPIEEASPSMFKREVSCVTESYK
GRFGIEFGKVLVLVHVRKIVGQKYIFTSNGRISLEKIFCTNETFYPLQLLVENINVYSVP
HDHSITFEKLFAVGSICFTLTNNEFYGCKAIVETSNNTPQGQVCVAVTLSKEPDLTPASN
LAKNTECSYRSLYFASCQSCIPKNIFSRITGGFYASARTREGGLKTVNLGLDLKVQKKNL
ETPGYTKRIDGMWYYTDAAIDVVQDYADAFPEIFEYMEKNGFQKNETTSAEDIFPEDSDE
KVKAVLTWLRTQPFYNQKKIPCNSPVLEKVVVEEVERIVDTFSSPTQQKTLLNCKPELLY
KEELSYGNLLPDPSVTVELFDRIICVKNNHVVPLGMKGTVIGICRPSSDSTEFMYDILFD
SEFEGGLEINCSKGRGYRLPLNAFIDISHGARLFKSHMKKPVVGPRGAPNKTTKNENYKL
KNKNTGDENSQNSAFAKFSTSPQTSKDYHAVPPFMPNGEAIYKPHGSYNKQNNNSLQQSK
STYGFGHEERAYSGAPNKFNKQKGQENWRTESSEQTEPNYKIYKKESNQTVVLPNLKSPH
PNKNVPSDKKFEMQMRPDFMPAFKKTTTEDPIEETTDALKKLLRIGSDNDNQKSIAENIS
PSKPNLTHSEQKASSLPNPTLLPSVQLLSYYQSKGLGLPRYQYFSSNSGIQAVIKLPNRQ
NIIGPYSDSKIGASELVAEKALKVLCSNNDQTSNSEAVPQSFPTPPKQWWSPEKVNDKSA
HKKFKIPPKTSTANKNWKDFIPLQVVKKEKANSSCNSNQTMKISRGDIGSNFSTQNQKPE
NSSDEVIQTNTKKEQKPRKQRKMRIAANFGTQS
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcctaaattcttcagatatataagtgaaagatatccctgtctcagtgaattc
gtgaaagaacatcagattcctgaattcgacaacctatatttggacatgaatggtataatt
cacaactgttcgcatcctgacgatgggaatgctcactttcgaataacagaggagaaaatt
tttgaagatatctttcactacattgaggctctttttcgcatgatcaaaccactcaaagtt
ttcttcatggctatcgatggggtagctcctagggcaaaaatgaatcaacagaggggaagg
agattcagatctgctaaagatgcacaaaaacttgaagatgaggcaataaaaagaggtgaa
gttttgcctccagaaccaagtttcgattcaaactgtataacacctggaactgaattcatg
gcaagattgcacgaacaattgaaatattttgtcgttaagaagatttcagaagatccattg
tggcaaagatgtaaagttatatattctggacatgagactccaggcgaaggtgaacataaa
attatggattatattagatacatgagatcccaaccagggtatgatcccaacacaaggcat
tgcttatatggattagatgcagacttaattatgttgggtctttgtactcatgatcctcat
ttttctctcctcagagaagaggtgaaatttggcaaaaaagccactaaaaaaacagctact
cctgaggaagtcagatttgctctcttgcatttatcattgatgagagagtatcttgaattg
gaatttgatccattgaagagaactttaaaaacattcaaatttgatatagaaaaaattatt
gatgactgggtactaatgggattcttggttgggaatgatttcatacctaatttaccaaac
ttgcacattactgatggagctttaccaattttatacaaagcatacatggaaattctacct
gaattggatggatatatcaatgaagcgggcattttgaacctagaaaggtttgaaatattc
atgaagaagttaggtgaaatcgatgtgcagaattttgaagaagtgaaggaagatttgttt
tacttcaggcaaaaaacaggacgtaaactgcagccatttgctaaaaataatacaaaattg
aagcacatggagttctggaagccagaaggtaacgaagaggatataaatcctgatttactt
gaaccattagaaggagggaacactccaagagattctggattgagtgatttgatagcaaga
actgaagaagaatatgttgatgaagaggacgaggaagaagacataatatcctctgatgaa
aatgatgagcttgagtttgaagactacaaaagaagttattacatgaataaattggaatat
gaaaaagttaccccagaagttatgaaatcgcaagctgaaggttatgtaagggcaattcaa
tggaatctccactactattataatggagtttgctcttggtcttggtattatccgcatcat
tatgctccttatatttctgacataaaaaatttcaaaaatctgaatttggagtacgatttg
ggtaaaccattcttgccttatgaacagcttctagcggtgttacctgctgctagcaagaga
ctcttgccatcttgctttcaaaaccttatgacctctgaaacttctccaataataaggtac
tatcctgaaaagttcgagacggacctgaatggaaaaaagcaagaatgggaagcagtagtt
ctcgtcccatttatagacgaaaacattttactggaagctatgagatcttgtagcgaccag
cttactagcaccgaggctgcaaggaatagacacagcccaatgttgtgctacacgtatacc
caggagaatctcggacaatacgattctcccatgtatttcccagatatttctaacaatcac
gctaaagttcaaccaatcaccatcgacgaaatcaaggtgccaagggaaaaattggtgaag
ggggcttatccaggtgtacttatggatgtctattacccaggttttcccactttcaaacat
ctcgagcaccagggccaactggaaaaagctcgagtaaatgtttttggacaggccagtcgt
ggtgaaaatatgataataagaataataccatctgaaagagttcttgatggggagcttccg
gtcaatttattgaacaagacagtgtatgttgggtatccacatttaactgaagcgaaggtt
gtttcaatctccaattcaaaacaaaagttaacctatgctggagtggatagggagccgata
gaagaggcttcaccaagcatgttcaaacgagaagtatcttgtgttacagaatcatacaag
ggcaggtttggcattgaatttggaaaagttttagttttagtacatgtccgaaaaattgtg
ggtcaaaaatatatttttacctcaaatggaaggatttcattggaaaaaatattttgtact
aatgaaactttttatcctttacaactgttggttgaaaacattaacgtgtactccgtccca
catgatcactctataactttcgaaaaattatttgctgtgggaagcatatgcttcacattg
acaaacaatgaattttacggatgcaaagctattgtggagacaagtaacaataccccacaa
ggtcaggtgtgtgttgctgtgacgttatctaaggagcccgatttaactccagcttccaac
ttggccaaaaatacagagtgcagctatagatctttgtactttgcttcatgtcagtcatgc
attccaaaaaatatattctcccgtatcacgggaggtttttatgcttctgccagaactagg
gagggtggattgaaaaccgtcaatttaggattagacctgaaagtgcagaagaaaaactta
gaaacacctggatacacaaagagaatagatggaatgtggtattacacagatgctgcaata
gacgtagtgcaagattatgcagatgctttcccagaaatcttcgaatacatggaaaagaat
gggtttcagaaaaatgagacaacttcagctgaggatatattcccagaagatagtgatgaa
aaagtgaaggctgttttgacctggcttagaactcaaccattttataatcaaaaaaagata
ccatgcaattctcctgttctggagaaggtggtagttgaagaagtagaaagaatagtcgat
acattttcttccccgacccaacagaaaactctactcaactgtaaacctgaattgctgtac
aaggaagaactgtcttatggtaatctccttcccgatccaagtgtgacggttgaattattc
gatagaataatttgtgttaagaacaatcatgtggttcctctaggaatgaaaggcacagtt
ataggcatttgtaggccatcctcggattccactgaattcatgtatgatattctgtttgat
agtgaattcgaaggaggtcttgaaataaattgttctaaaggtcggggatacagattaccc
ctcaatgctttcatagacatatctcatggggctagattgtttaagtcacatatgaaaaaa
ccagttgtaggacctagaggagccccaaacaaaacaaccaagaacgaaaattataagctc
aagaataaaaatacgggtgatgaaaattcccaaaattccgcttttgcaaaattcagtaca
agcccccaaacttccaaagattaccatgcagtgcctccttttatgccaaatggggaggct
atttacaaaccacatggttcttacaataaacaaaataacaacagtttacaacaatccaag
tcgacctatggttttggtcatgaagaaagggcatattctggagcccctaataaattcaat
aaacaaaaaggacaagaaaactggagaactgagtcatccgagcaaactgaaccaaattat
aaaatttataagaaggaatcaaatcaaacagttgtccttccgaatttaaaatcgccccat
ccaaataagaacgtaccaagcgataagaaatttgaaatgcaaatgagacctgattttatg
cccgctttcaaaaaaactaccacagaggatccaattgaagaaaccacagacgctctgaaa
aaacttctcagaattggttcagataatgacaatcagaaaagcattgctgaaaatatttct
ccatctaaaccaaatcttacccattctgaacaaaaggcaagcagtcttccaaatccaact
ttgcttccatctgttcagttactttcatactaccagtccaaaggtcttggtttgcccaga
tatcagtatttttcaagtaattcaggcatacaagctgtaatcaaacttccgaatcgtcaa
aatataataggtccatattctgattcaaagataggagccagtgaattggtcgccgagaaa
gctctgaaagtactctgctcaaacaatgatcaaacgagtaacagcgaagcggtacctcaa
agttttccaacacctcctaagcagtggtggagtccagaaaaagtcaacgacaaaagtgca
cataaaaagtttaaaattccgcccaaaacttccactgctaataagaattggaaagacttc
ataccgctacaagttgtaaagaaagaaaaagcgaactcaagttgtaattccaatcagaca
atgaaaatttcgaggggtgatattggaagtaacttctctacccaaaatcagaaacctgaa
aattcgtcagatgaggttattcaaactaatactaagaaggagcagaagccaagaaagcaa
aggaaaatgagaattgcagctaatttcggaacacaatcataa
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integrated database retrieval system
