Camellia sinensis (tea plant): 114256935
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Entry
114256935 CDS
T07364
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114256935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114256935
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114256935
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114256935
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
114256935
NCBI-ProteinID:
XP_028052431
LinkDB
All DBs
Position
Unknown
AA seq
2432 aa
AA seq
DB search
MSHFSSLVSNQIRFLLQSLNDSNSDYVFQELSQFVEYGCEGSILLLQTCLDHTNFREGDM
HNMQLKPDLLAAIFRYLLQWPNFSTVFCEAMRTMVISEQLLTDFCDALHLSVTEKIGIGL
ALADSENVDIRTSGQNFCMGQIEELRRNSAVIDSSEQIQNIIMFLIRSEGLSKHVDSFMQ
LLSLMEPKERTPLILAPLLSDDFYEARNMELFYGCRENEFDAILAEMVSETSMADIMSEL
GYGCTVDASHCNEVLSLFLPLTEATVSRILGTITRTHTGLEDNQNCCLTFYSAIGSSATC
EASCLSSCNVHVLVDSIKQLAPDINWINVVENLDHEGFYIPSEQAFFLFMSIYLRACQDP
FPLHAICRSVWKNVDGQLSFLRYAVSASPEIFTFSCSARKLACANGWKVNEVPHGLANHA
WLSLDLLEVLCQLAERGQAKYVRQILEFPLKQCPELLLLGIAQINTPYNLLQWEVFSTVF
PIIVGDAAGSGIMLQLWQSNTKLVLRGFIDTMKTDQGNIVTVLEICQELKILLSLLEQIP
FYFSIQLAALATQKEYIDLEKWLNDNIRTHKDVFFEACLNFVKEILFPPEDISANSFQHS
GALANLNVRISPRFLKALEDNNVQITSEKLSEELKWLCKASKYVGLRLQNVENSETLTPN
GYSNDTEADANTYLDQLFDGRLSIDDMVQILARFKESSERREQLIFECMVKNLLEEYQFF
PQYPEMQLKIAAILVGSLIKHQLLSNLTLSIAVHTVLEALRKPPDTKVFAYGILALEQFL
DYLVDLPLLCNHILQISHLHGTHVELIAFIEHTLARISSSHLISNGGSSSFTDPHSGSIP
TTVEMVELVGPRSSQHGKQLSSSLPVQQIHQGLLGDRHKEHSTSGIFSKPILPPGNSSNV
SLGDIPNPQKNATGVRAAVLSSSSGFLHSSRAITSSMQHSSTTGFGSALNIETLVAAAER
RDTSIEVPASDIQDKILFLINNISSSNMEAKAKEFTEILSEQYYPWFAQYMVMKRASIEP
NFHDLYMKFLDNVNSRALNKEIVKAAYENCKVLLRSKLIKSSSEEFAFLSLLKNLGSWLG
KFTIGRNQVLRAREIDPKSLIIEAFEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAI
LGLLVEIYALPNLKMNLKFDIEVLFKNLGVDMKEVKPTSLLKDRVREVEGNPDFSNKDIG
ASQPQLVTEINTGIMCTLNQVELQPEISNSSQSGGQLNLLSQYTGNLHFVSGPLMEDEKM
ATLSLSDQLPSGQRLSLVPPSQSPYSVGQLSSPICDIGSHIIFNQKLSAMGLQYFQRIVP
LAMERAIKEVMAPVVQRSVTIAIQTTKELVLKDYAMESDETCIYNAAHLMVASLAGSLAH
VTCKEPLRVSISSQLRNSLQGFNITNEAQEEAVAIVLNDNLDLGCAVIEHAATDNALKTI
DNEITIQLSLRRKHREGVGPSYYNASMYTQGPMGVIPEALRPRPGHLSHSQQRVYEDFIR
FPWQNQSSQSSNKVPTDVMVSSSDYVGTGVSCACVSPTRQLNPALYSSGLRSVGLSSVAQ
PVYLISEELDPGSTQLIGGSSTLMGATDGVVSHGAKSNNVASLSSAATAPEQHFLETSNA
VKELEGAVPPLTETSTTEHMASGISEHLFTTGDALEKYQIVAQKLEMLITEDTEETEIQG
LIAQIPEIMLKCISRDEAALAVGQKVFRSLYEKASSSSHVSAHIAILASIRDVCKLVVKE
LTSWVIYSNEERKFNRDIIVGLIRKDLLNLTEYNMHLAKLIDAGRNKSATEFAISLLQTL
LIQELRVSVSELPNLIDVLAKVATRPGASDSLQQLVETARNPAANAAVLSGFSLGKDDKA
KPSIEKKGSDNATILTREEYINADSRAADDPASFHDQVSTLFAEWYKIYELHGTNEATCT
RFLSQLQQSGYFNGDDMSDRFFHHLMELSVACCLSTVGISSRSLSFQSSHTSQNLSFLAI
DVYAKLVVLVLKYCVAEHGPNKLLLLPKILSVTVRVIQKDAEEKRASFNPRPYFRLFINW
FFNLLAPDSIIEGCSFQVLTAFANAFHLLQPLKVPAFSFAWLDLMSHRSFMPKLLIVNPP
KGWPHVQRLLVDLYKFMEPYLRNAELGETIHFLYKGTLRVLLVLLHDFPEFLCDYHFSFC
DVIPSSCIQMRNVILSAFPHNMRLPDPSTPNLKIDLLAEINQSPRIFSEVDAALKAKQMK
SDVDEYLKTRYQGTFLSELVQRLLLTQNKATQAGTWYNVPLINSLVLYVGMQTIQQLEAK
NPHPLAQMTNNDSMELLIAMDIFWILIADFDSEGRYLFLNAIVNQLRYPNNHTHFFSYVL
LYLFVNANQEIIQEQITRVLLERLIVNKPHPWGLLITFIELIKNPKYNFWSRSFTRCAPE
IEKLFESVSRSCGGPKPVDESIVSGGILDSMH
NT seq
7299 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatttctcctcactcgtctccaatcaaatccggttcttgttgcagagcctcaac
gattccaattccgactatgtttttcaggaactctctcagtttgttgaatatggatgcgag
ggtagtatattgctgcttcaaacctgcttggatcatacaaattttcgtgagggagacatg
cacaacatgcagcttaagccagatttattagctgcaatatttagatatttactgcaatgg
ccaaattttagtaccgtgttttgtgaggcaatgaggaccatggtgataagtgaacaactt
ctcacggatttttgtgatgcattacacttgtcggtgactgaaaaaattggaattggcctt
gctttggctgactccgagaatgttgacatcaggacaagcggccaaaacttctgcatgggc
cagattgaggagttgcggagaaattctgctgttatagattcttccgagcaaattcaaaat
attattatgtttttgattcgctcagagggcctttctaagcatgttgactcatttatgcaa
ctactgtctttgatggagccaaaggagaggactccactaatattagctccattgctttct
gatgatttctatgaggccaggaatatggagttattctatggttgcagagaaaatgagttt
gatgccattttagcggagatggtgagtgaaaccagcatggctgatattatgtccgaactg
ggctatggatgcactgttgacgcttcacattgcaatgaggtgttatctctcttcttgcct
ctcactgaagccacagtttctagaattcttggcacaattactcgcacccatactggtctt
gaggacaaccaaaattgttgtttaacattctactctgccattggtagcagtgccacatgt
gaggcatcatgcctgagctcttgcaatgttcatgtccttgtggattcgattaagcaactt
gctcctgacatcaactggataaatgttgtggagaatctggaccatgagggtttttacatt
cccagtgagcaagcattttttcttttcatgtccatttatcttcgtgcatgtcaggatccc
tttccgctgcatgccatatgcaggtctgtctggaagaatgttgatggtcaattatctttt
ctcagatatgctgtatcagcatcaccagaaatatttacattttcttgttctgctaggaaa
ctggcatgtgctaatggatggaaagttaatgaggttccacatggacttgcaaaccatgca
tggttatctcttgaccttctggaggtgctgtgtcagctagctgaaaggggccaggctaaa
tatgttcgacagattctggagtttcctcttaaacaatgccctgagcttttgttgcttggg
attgcccagattaatactccctataatctgctccaatgggaagtgttttccacagttttt
cccatcatagttggtgatgctgctggaagtggtatcatgcttcagctttggcaatctaat
accaagctcgtgttgcgaggattcattgatacgatgaaaacagatcaaggcaacattgtt
acagttttggaaatctgccaggagctgaagattctgttgtctctgttggagcagattcca
ttttattttagcattcaactggctgctcttgctacacagaaggaatacatagatcttgag
aaatggttgaatgataatataagaactcacaaagatgtattcttcgaggcatgcctgaat
tttgtaaaggagatacttttccctccagaagatatctctgccaattccttccaacattct
ggtgctcttgcaaatttaaatgtcagaataagtccaaggtttttaaaggcccttgaagat
aataatgtacagattacctctgagaagctctctgaggaactgaaatggttgtgcaaagca
tccaaatatgttggtctaagacttcagaatgttgagaattcagaaacattgacacccaat
ggatattcaaatgacacagaggcagacgcaaacacttacttggatcaattatttgatggt
cggctgtctattgatgatatggttcaaatacttgctcgtttcaaggagtcatctgagaga
agggagcaattgatttttgagtgcatggtaaaaaatctattggaggagtaccagttcttc
cctcagtatccagaaatgcagcttaaaattgcagccattctagttggttccctaataaag
catcagcttctgagtaatcttacacttagtatagctgtacatactgtgttggaagcattg
cgtaaacctccagacacgaaagtatttgcttatggaatcctggctttggagcagtttctt
gactacctggtggatcttccactgctttgcaatcatattttgcaaatatctcatttacat
ggtactcatgtagagcttattgcatttatagagcatactctggctagaatatcatcaagc
cacttgatatcaaatggaggcagcagttcttttactgatccccacagtggttctattccc
actacagtggagatggtggagttagtgggacctaggtcctcacagcatgggaagcaactc
tcttcttccctcccggtgcaacaaatacaccaaggtttactcggtgacaggcataaagaa
cattccacttcaggcatcttctcaaaaccaattttacctcctgggaattcttcaaatgtt
tccttgggtgatattcctaatcctcagaagaatgcaactggcgttcgggcagctgtatta
tcttcttcttctgggtttctacattcttccagggcaattacttcgagcatgcaacattca
tctactacagggtttggttctgctttgaacattgaaacacttgttgcagcagctgagaga
agggatacttccatagaggttccggcatcagatattcaggataagatactatttctgatt
aataatatttcatcctcaaatatggaagcgaaagcaaaggaatttaccgagattctaagt
gaacaatattatccttggtttgcacaatacatggtcatgaaaagagcaagcatcgaaccc
aatttccatgacttgtacatgaagtttttagacaatgttaattcgagagcattgaataag
gagattgtcaaagctgcttatgagaattgcaaggttcttttaagatcaaaattaataaaa
tcaagttcagaagagtttgcatttctttccttgctgaaaaatttgggtagctggctgggg
aagtttaccataggcagaaatcaagtactcagggcccgagaaatagatcccaaatctttg
ataatagaggcgtttgagaaggggctgatgattgcagtgattccatttacctcaaagatt
ttggaaccatgccaaagtagtcttgcatatcagcctcccaatccttggaccatggcaatt
cttggcttacttgttgagatttatgcgttaccaaatctgaaaatgaatctcaagtttgac
attgaggttctcttcaaaaaccttggtgtggatatgaaagaagtaaaaccaacatctctg
ctcaaagatcgagttcgagaagtggaaggcaaccctgatttttctaataaagatattggg
gcatcccagccacaattggttactgaaatcaacactggaattatgtgtacattaaatcag
gttgaattacagcctgaaatatccaattcatctcaatctggtggtcagttaaatctattg
tctcagtataccgggaatcttcattttgtgtctggtccattaatggaggatgaaaagatg
gcaaccttaagcctctctgaccagcttccttctggacaaaggctttctctagtacctcca
tcacaatcaccatattctgttggtcagctgtcttcacctatctgtgatatcggaagccat
attattttcaaccaaaaactcagtgctatgggcttgcaatattttcagagaattgttccc
cttgccatggagagggctataaaggaggtaatggctccggttgttcaacgcagtgtaacc
atagctattcagacaacaaaggaacttgttttgaaggattatgccatggagtctgatgaa
acctgtatatacaatgctgcccacttgatggtagcgagtctagctggaagtttggcccat
gtcacatgcaaggaacctcttcgtgtctccatatcaagccaactgaggaattcattgcag
ggattcaacatcaccaatgaagctcaagaagaagccgttgctattgttttaaatgataac
cttgaccttggttgtgcagtgattgagcatgctgcaacagacaatgcattgaagaccatc
gataatgaaatcactatacaactttcacttagaaggaagcatagagaaggtgttggtccg
tcatattataatgcaagtatgtatacacaaggtcctatgggtgtaataccagaggccctc
cgccccagacctggtcacctctcccattctcagcagcgagtttatgaggatttcattcga
tttccttggcaaaatcagtccagtcagagttcaaataaagttcctactgatgtgatggtt
tcgtctagtgattatgttggtactggtgtgtcttgtgcttgtgtttcacctaccagacag
cttaacccagcactctactcttctgggctcaggagtgtgggtctgagctctgttgctcag
cccgtatatcttatttctgaggagttggaccctggttctacccagcttattggtggttcc
tccactctcatgggggcaactgatggtgtagtttcacatggtgctaaatctaacaatgtt
gcttcactttcttcagcagcgacagcccctgaacagcattttttagagacctctaatgct
gtgaaagaattggaaggggctgttccaccattgactgaaacttctaccacagagcacatg
gctagtggcatttcagaacatttatttaccactggagatgcactagagaagtatcaaatt
gttgcacagaagttggaaatgttgataaccgaagacactgaggagacagaaattcaggga
cttattgcccaaattcccgaaatcatgctgaaatgcataagcagagatgaagctgcattg
gctgtgggccaaaaggtttttaggagtttatatgagaaagcttcaagcagttcacatgtt
agtgctcatattgcaatcctggcttctattcgagatgtatgcaagctagttgttaaggag
ctcacaagttgggtgatctattcaaacgaggagaggaagttcaacagagacataattgtt
ggacttattcgcaaggacttactgaacctcacagaatacaacatgcacctggcaaaactt
attgatgctgggaggaataaatctgctacagaatttgcaatttctcttctccagactttg
ttgattcaggagttgagagttagtgtatctgaacttcccaatttgattgatgtgttggca
aaggttgcaactcgacctggagcttctgactctttacaacagttggtcgagactgcaagg
aatcctgctgctaatgcagcagttctttctgggttttctcttggcaaggatgacaaggct
aaaccatccatagaaaagaagggttctgataatgctactattctaacaagagaagaatat
atcaatgccgattctagggcagcagatgaccctgccagctttcatgatcaggtttccacg
ctatttgcagaatggtacaaaatatatgaactccatggaacaaatgaagcaacttgtact
cgctttctctcacaactgcagcaaagtggttattttaatggagatgacatgtctgatcgt
ttcttccatcatctcatggaactttcggtcgcatgttgtctgtcaactgtggggattagc
tccaggtccttgtctttccagtcttctcacacatcacagaacctatcatttcttgccatt
gatgtgtatgcaaaacttgttgttttggttttgaagtactgtgtggcagagcatggacca
aataaacttcttcttttgccaaagatattatcagtgactgttagagtcattcaaaaagat
gctgaggaaaagagagcatcttttaatccgaggccatatttcaggttgttcattaactgg
tttttcaatcttcttgctcctgattccataatagaaggttgtagctttcaggtgttaact
gcttttgcaaatgctttccatttattgcaacctcttaaagttccggctttcagcttcgca
tggcttgacctcatgagtcacaggagttttatgccaaagttgcttatcgtcaaccctcca
aaaggctggcctcatgttcaacgcttgctggtagacctgtacaaattcatggagccatac
ctgcgcaatgctgaactgggagaaacaattcattttctgtacaaaggcactctgagggtg
ttgcttgtgctgcttcatgattttccagaattcctctgcgattatcatttcagcttctgt
gatgtgatcccttccagctgcattcagatgcgaaatgtcatccttagtgcttttccacac
aatatgaggctccctgatccttctactcccaacttaaagattgatttgcttgcagaaatc
aaccagtcaccacgtattttctcagaagttgatgctgctctgaaagccaagcagatgaag
tcagatgttgatgagtatctcaagacaagataccagggaacattcttgtcggaactggta
cagagattgctgctgacgcaaaataaagcaacacaagctgggacctggtacaatgtcccc
ttgataaactcccttgttctttatgttggaatgcagactatccaacaactagaagcaaaa
aatccacatccacttgcacagatgacaaacaatgattccatggaacttttgattgccatg
gacatcttctggatcctgattgcagactttgactccgaagggcgttatctcttcctcaat
gcaatcgtgaatcagctacgctacccaaacaaccatacacatttcttttcctatgttctt
ctctacttgtttgtgaatgctaaccaggaaattatacaggagcaaataacaagagttttg
ttggaacgactgattgtgaataaacctcatccttgggggcttttgattaccttcattgag
ctcatcaagaatccaaaatacaacttctggagtaggtctttcacgaggtgtgcaccagag
attgagaaactttttgaatcagtttcgagatcgtgtggtgggcctaaacctgtagatgaa
tcaattgtatctggtggaattcttgatagtatgcactga
DBGET
integrated database retrieval system
