Camellia sinensis (tea plant): 114257859
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Entry
114257859 CDS
T07364
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21-like
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114257859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csin03041
]
114257859
Enzymes [BR:
csin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114257859
Spliceosome [BR:
csin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114257859
Complex C
U5 SnRNP specific factors
114257859
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
114257859
NCBI-ProteinID:
XP_028053469
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
MKRAPSDVGGGGTATGDDIKKPVFLTKAQREQLALKRREEEIADHKRHSELLLHNHRPST
SDSKPHSDPSHDTTRRHRSSRDHDYERDRDRDSERRNREREREEEQKARERARLEKLAER
EREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEARLLF
GRGFRAGMDRREQKKLAAKNEKEIRDEIRKKDGIEEKPEEAAAQKLKEEAADLYDTFDMR
VDRHWSDKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESRLSQELLRAVERAGYK
TPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEDNDAEGPYAVV
MAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLIDCL
ERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDDKKIYRTT
YMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQHVIMMKESEKLYRLQKLLDEL
GDKTAIVFINTKKSADNLSKSLDKSGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATD
VAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQM
LIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagcgccgagtgacgtcggcggaggcggcacagccactggcgacgacatcaag
aagccggtattcctcaccaaagcccaaagagagcagttagccctcaagcgtcgcgaggaa
gaaattgctgaccacaaacgccactccgaactccttctccataaccatcggccttccacc
tccgattccaaaccccactccgatccatcgcatgacaccacccgccgccaccgctcctcc
cgcgatcacgattatgagcgcgaccgagaccgcgattcggagcggcggaaccgcgagcgg
gagcgcgaggaggaacaaaaggctcgggagcgtgcccgattggagaagctagcggagcga
gagcgagagaaagagcttgaatccatcaaagagcaatacttgggatccaaaaaacctaag
aaacgcgtcatcaagcccagcgagaagttccgcttctccttcgactgggaaaacaccgag
gacacctcccgcgacatgaatgtcctctaccaaaaccctcacgaggctcgcctcctcttc
ggccgtggctttcgcgctggcatggatcgccgcgagcagaagaagctcgctgccaagaac
gagaaggaaatcagagacgagattcgcaagaaggacggtattgaggagaaacctgaagag
gccgccgcccagaaactcaaggaagaggccgctgatttgtacgacacatttgacatgagg
gtcgaccgccactggtccgacaagaagctcgaagagatgaccgagagggattggaggatc
ttccgtgaagatttcaacatttcctacaagggatccaagattcctcgccccatgaggagc
tgggtggagagcaggttgagtcaggagcttctcagggccgtcgagagggcaggctacaag
accccctccccaattcagatggctgccattccactcggtctccagcagcgtgatgtcatt
ggtattgcggagactggttctggtaagactgctgcatttgttcttcccatgttgacttac
atatctaggctacctccaatgagcgaagacaacgacgccgaggggccttatgcagttgtc
atggcccctactcgagaacttgcacagcagattgaggacgagactgtcaagtttgcccat
tatttgggcatcaaggttgtttctattgttggcggccagtcaattgaagagcaaggtttc
aagattaggcaagggtgcgaggtagtcatcgccacgcctggccgtcttattgattgcttg
gagaggcgttatgctgttttgaatcagtgcaattatgttgtccttgatgaggctgatcgt
atgatagatatgggttttgagccgcaagttgtgggtgtcttggatgcaatgccttcaagc
aatttaaaacccgagaacgaagatgaggagctcgacgacaaaaagatttaccggacaact
tatatgttcagtgctacaatgccaccggctgtggagcgacttgctagaaagtacctcaga
aatccagtggttgtcaccattggtactgcaggaaagacaactgacctaatcacccaacat
gtgatcatgatgaaggagtcggagaaattgtataggttgcagaaattgttggatgaactt
ggagataagacagctattgtgtttattaacactaagaagtctgctgataacctttccaaa
tctttggataagtctggctatcgtgtgacaactttacatggtggcaagtctcaggagcag
agagaaattagtcttgaaggtttcagggccaagagatacaatgtattggttgcaacggat
gtagcaggacgggggattgatattcctgacgtggcccatgtaatcaattatgatatgcct
gggaatattgaaatgtacacccatcgtattggacgaacaggtcgtgcaggaaagacaggt
gttgcaacaacattcttgactttacatgatactgatgtcttctacgatctcaagcagatg
cttattcagagtaacagtcccgtgccccctgaattggctagacacgaggcttcaaaattc
aaaccgggaagcattcctgacagaccacctaggcggaatgacacagtgtttgctcattga
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