Camellia sinensis (tea plant): 114269309
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Entry
114269309 CDS
T07364
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114269309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114269309
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
114269309
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_19
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_7
BTAD
Motif
Other DBs
NCBI-GeneID:
114269309
NCBI-ProteinID:
XP_028066407
LinkDB
All DBs
Position
Unknown
AA seq
1191 aa
AA seq
DB search
MEEKEEEVVDGGGDAFVLRQLQDSIDSNPNDSLPHLNLGLILWKEESKEIREKAAEHFLV
AAKLNPHNGTAFRCLGHYYSRVSIDYQRALKCYQRAVTLSPDDSESGEALCDLLDEGGKE
SLEVAVCSEASDKSPRAFWAFRRLGFLQIHQKKWSEAVPSLQHSIRGYPTCADLWEALGL
AYQRLGMFTAAIKSYGRAIELEGSRVFPLVESGNINLMLGSFRKGVEQFQQALQISPQNL
SAHYGLASALLGLSKECTSSGAFKWGASLLEEASNVAKASTCLAGNVSCIWKLNGDIQLA
YATCLPWTEEGLGLETDDEAFSTSIISWKRTCHSAAVSACSSYQRALHLAPWQANIYTDI
AIASDLICSLKECFKQDHNAWQLPEKMSLGGLLLEGDNSEFWVLLGCLCDHSALKQHAFI
RGLQIDVSLAISWAYLGKLYGEEGERQLARQAFDRARSIDPSLALPWAGMSADIYARELT
PDEAYESCLRAVQILPLAEFQIGLAKLALPSDHLSSSQVFGAIRQAMQRAPYYPESHNMN
GLVCEARFDYQSAAVSYRLARSAISTFAGNVPKSHLRDISINLARTLCMAGNALDAVKEC
EELNKEGLLDLEGLQIYAVSLWKLGKNDLVLSVAKDLTASALSMKQPSRDASVTLICRLL
YYISGLESAVICILKMPKELFQSSKISFVLSAIHALDQSNQLVSVVSRSRIFLASPEETT
RMHFLIALSKLVKHGSEECLGIQSGVKHLRKVLHMYPNSDLIRNLLGYLQLSSKEWKDTH
IASRCFIISPLGCLEEEGLKSAYEILGAGAVACYTTQNYKTKFSFPTCECQCLHGTRAIR
QLQKLLHQEPWNHNARYLLIINYLQKAREERFPQYQCDLLGRLINVALSCQLYSKKDKSS
QYHMSQLLLCASEISLQGGDHIGCINYAKNATGLLLSDNYLFFSHLQLCRAYAAEGKLSS
LHEEYIRCLELKTDYPIGWICLKFIESQYGLQAELNLLELCFENCSKEIKSSLNVWMAVF
SLAQGLIAIWTKDFLRAEELLAQACSLAGAESCLFFCHGVICMELARQLCDSQFVSLAIR
SLKKAKETSVVALPIVSLLLGQAEASLGSKVKWEKNLRLEWFSWPREMRPAELFMQMHLL
SMQGSVSSDSSSSVEFCQSPQSWILRAIHLNPSCLRYRKVLQKFMGVTSGM
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaggaagaggaagtagtagacggaggaggagatgcttttgtcttacggcag
ttgcaagattctatagactccaaccctaatgactccctcccccatttgaatctcggattg
atattgtggaaagaagaatcgaaagaaatcagagaaaaagcggcggagcattttctggta
gcggctaagttaaaccctcacaacggcactgcttttagatgtttgggccattattacagt
cgagtgtccatcgactaccagagagctctcaagtgttaccagagagctgtcaccctctct
cccgatgactccgaatctggggaagcactgtgtgatttgttggacgaaggcggtaaggag
agcctggaggttgctgtttgcagcgaagcttcagacaagtccccaagggccttctgggct
tttcgaagattgggtttccttcagatccatcaaaagaaatggtctgaagcagtacctagt
cttcagcattccatcagaggctatcctacctgtgctgatttgtgggaagctttgggtctc
gcctaccagcggttaggcatgtttactgcagctattaagtcatatgggcgggctattgag
ttggagggctcacgagtctttcccttggttgaaagtggaaatattaatttgatgcttggt
tcctttagaaagggagttgagcagtttcagcaagctttacaaatctctcctcaaaattta
tctgctcattatggccttgcttctgcactgcttggtctatccaaggaatgtacaagttca
ggcgcatttaaatggggagcttcactgttagaggaggcatctaatgttgcaaaagcaagt
acctgcttagctggaaatgtttcttgtatttggaagttgaatggagatatccagcttgcg
tatgcaacatgtttaccatggacggaggaaggcttgggattagaaactgatgacgaagct
ttcagcacttccatcatttcctggaaaaggacctgtcactcagccgcagtttctgcctgt
agttcctatcagcgggctttgcacttggccccctggcaagcaaatatttatactgatatt
gctatcgcttcggatctcatttgttctttgaaggagtgttttaagcaggaccataatgct
tggcagctacctgagaagatgtccttggggggcttgttgcttgagggtgataacagtgag
ttttgggtgttgttgggttgtctatgtgatcatagtgcattgaaacaacatgcttttata
cggggattgcaaatagatgtatctctagctatttcatgggcataccttggaaagctctat
ggcgaagagggggagaggcaattggccagacaagcatttgatcgtgctagaagcatagat
ccttctcttgcattaccatgggcaggcatgtcagctgatatttatgctagggagctgacc
ccagatgaagcatatgagagttgtttacgggctgttcagatactgcctcttgcagaattt
caaattggtcttgcaaagcttgctctgccttcagatcacctttcatcttcacaggtattt
ggagccatccggcaggccatgcagcgcgcaccctactatcctgaatcccacaatatgaat
gggctggtttgtgaggcacgatttgattatcagtctgctgctgtctcatataggcttgca
cgttctgcaatcagtacttttgctggcaatgttccaaaatcccatctcagagatatatca
attaatttggccagaacgctttgtatggcagggaatgctcttgatgctgtaaaagagtgt
gaagaattaaacaaggaaggtctgcttgatttggaaggtttgcagatatatgctgtttct
ttatggaaacttggaaagaatgacctggttctttctgtggcaaaagatctcactgcaagt
gctttgtccatgaaacagccatccagggatgcctctgtcactttaatctgtagattgctt
tactacatttctggactggaatcagcagttatatgcattttaaaaatgcccaaggaatta
tttcaaagttcaaaaattagttttgtactatctgccattcatgctcttgatcaatctaat
cagctggtatcagtggtttcacgcagtcgtatctttcttgcatctcctgaagagaccacc
agaatgcacttcttgatagcactcagtaaactcgtcaaacatggatctgaagagtgcctc
gggattcaaagtggagtaaaacatcttcgaaaagttcttcacatgtatcctaacagtgat
ttgataaggaatctacttggttatctccaactgtctagtaaagaatggaaagatactcat
attgcaagtagatgctttatcataagccctttggggtgtctggaggaagagggtttgaaa
tcagcatatgagatccttggtgctggtgcagttgcttgttataccacacaaaactacaag
acgaaattttccttcccaacctgtgaatgccagtgcttgcatggaacaagagcaatccga
caactacaaaagctgttacatcaagaaccatggaatcataatgcccgctacttgcttata
attaattatctacagaaggctcgtgaggagagatttcctcaatatcaatgtgatctactt
gggaggttaattaatgtggctctttcctgtcaattgtactcaaagaaagataagtcttct
caatatcatatgtcccagcttctactttgtgcctcagagataagtttgcaaggtggagac
cacatcggctgtatcaactatgcaaaaaatgctacggggcttttgctttccgataattat
ctctttttttcacacttgcaattatgtcgtgcctatgctgcagaagggaaactttcaagc
ttacatgaagagtatataagatgcttggagctcaaaacagattatcctatcggttggatt
tgccttaaatttattgaatctcaatatggactacaggctgagttaaatctattagagttg
tgctttgagaattgctcaaaggagataaaaagttcattgaatgtgtggatggctgtattt
agtttggcacagggtctgattgctatttggaccaaggatttccttcgtgcagaagagttg
cttgcacaggcatgttcattagctggtgctgagagctgcctctttttctgtcatggtgtc
atttgtatggagctcgctagacagctttgtgattcgcagtttgtatcccttgccattaga
agtctgaagaaggctaaagagacatctgtcgtcgccttacccattgtctcattattgctg
ggtcaagcagaagcaagcctgggctctaaagtgaaatgggagaaaaaccttcgtcttgaa
tggttttcttggccacgagagatgaggcctgcagaactctttatgcaaatgcatttgctt
tcaatgcagggaagtgttagttctgactcttcatccagtgtggagttctgtcaaagccct
cagagctggattcttcgggcaatacatttgaacccttcttgtttgagatatcggaaggtt
ctgcagaagtttatgggagtgacttcaggtatgtaa
DBGET
integrated database retrieval system
