Camellia sinensis (tea plant): 114307585
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Entry
114307585 CDS
T07364
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csin
Camellia sinensis (tea plant)
Pathway
csin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114307585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csin03019
]
114307585
Messenger RNA biogenesis [BR:
csin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114307585
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114307585
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
114307585
NCBI-ProteinID:
XP_028108782
LinkDB
All DBs
Position
Unknown
AA seq
2426 aa
AA seq
DB search
MLPFYSALSGQIRYLLQSLNESNSDSIFEELCQYIGYGTEGSMLLLQTCLDHLNIYGRDL
KNMQLEPIFGSIFKYILDKPNFSTVLSESLRSTVINEDFLESLSNALNLSATEKIGIGLA
LSDSENLDISMCGKNFCMAQIGELFASHACVDSAEQIQNIFMFLHRSEGLSKHVDSFMQM
LSLVQLNKGDRFILAPFLLDELREATFLRNFDLFDESNEDDFDAVLAEMEKEMSMADIIK
ELGYGCTVNVSQCIEMLSLFLPLAEITVSRIFGTIARTHAGLEDNQNAFSTFYSALGSGS
SSDLPLLSSWNIDVLIDSIKQLAPGTNWISVVENLDHEGFYFPNEAAFFFFMSVYRSACQ
DPFPLHAICGSVWKNTEGQLSFLKYAVSVPPEVFTFAHSGRQLAYVDAVHGHKFQLGHAN
HAWLCLDLLEVLCQLAERGHASSVRSMLKHPLEHCPEVLLLGMAHINTAYNLLQYEVSST
VFPMILKDSMRSGIILHLWHVNPNLLLRGFLDAHNIDPENMSRVLDICQELKILSPVLDM
VPSCFGIRLAALASQKELIDLEMWLSSNLSTYKDIYFVECLKFLKEIQFGVSQDVSAEHF
NHSGRIWNLYLETSPTVLKVLQYHTGLISSSQLSEELEKVNVTFMHSTSRMKNSGANDSS
PSDGYAEDIETEANSYFHQMFSGQLTIDAMIQMLARFKESPEKREQSIFECMIGNLFEEY
KFFPKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRGVLDSLRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRGTHSELVAFIERALSRISAGHAESDGAHGTSADQQHG
SIQATETNMEMPGSSFPLIASVSTQLGSQISSSIQLQQRHQVRLDDGQKASGTSSNYVKP
LTSTAGQSSLIPASDAAGNQKLQSASSASSVLSSSTGFARPSRAITSARFGSALNIETLV
AAAERRETPLEAPASEIQDKISFIINNLSAANVEAKAKEFTEFMKEQYYPWFAQYMVMKR
ASIEPNFHDLYLKFLDKVNSKPLNKEVVQATYENCKVLLGSDLIKSSSEERSLLKNLGSW
LGKITIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTM
GILGLLAEIYAMPNLKMNLKFDIEVLFKNLGVDLKDVTPTSLLKDRVRQLEGNPDFSNKD
VGASQQQMVGEVKSGTISTLNQVELPLEVATPAHPGGHSHILSQYAAPLHISSGALSLTE
DEKLAALGLSDQLSSAQGLLQRQSPFSVSQLPAPASNIEQQVIVNPKLHAFGLYMHFQSV
VPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMELDETRIRNAAHLMVASLAGSL
AHVTCKEPLRGSISSQLRNSLQGLNIASELEQAVQLVTNDNLDLGCALIEQAATEKAIQT
IDGEIAQQLSVRRKHREGLGPAYFDSGLYAQGHAGVLPEALRPKPGRLSHSQQRVYEDFV
RLPWQNQSTNSSNALPVGPSVSSVSAGMSWTFNSASGQLNPGIFSSGIGNTGISAVVQPL
DLVSEEMDSSSAQLHSDSSTHIGTTDGVNSQDFENDAIVNSFSSVSSPELHSVETSNIVK
ESVASSQPLPSTSVIERLGSSTPEPLWTTGDALEKYEIISEKLETQVTNDAKDADIQGVI
GEVPGIILRCVSRDEAALAVAQKVFKGLYENASNNTHVAAHLAILAAIRDVSKLVLKELT
SWVIYSDEDRKFNKDITIGLIHNELLNLAEYNVHMAKLIDAGRNKAATEFAISLIQTLVI
NDSKVISELHNLVDALAKLAARPGSPESLQQLVEVARNPVANNAAVSVGKEDSTRQAREK
KAPGHAVASREDYNVVESMEPDPAGFREQVSSLFVEWYRICELPGTNDAACAHFVLQLQQ
SGLLKGDDMSDRFFRSLMELSVSHCLSSEVISSGPQQSSQQVQPLSFLAIDIYAKLVFSI
LKFYPVDQGSNKLSLLPKVLGVTMRLVQKDAEEKKSSFNPRPYFRLFINLLLDLGSIDLV
FDGANFQVLTAFANAFHALQPLNVPGFSFAWLELVSHRSFMPKLLTGNAQKGWPYMQRLL
VDLFQFLEPFLRNAELREPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQM
RNIILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKVKMIKGDVDEYLKTR
QQGSSFLTELKQKLLLPPSDAAQAGTQYNVPLINSLVLYVGMQAIQQLQARTPPHAQSMA
SSVPLAVFLVGAALDIFQTLIMDLDTEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFAE
SNQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFE
SVSRSCGGPKPVDEGVVSGGISDNMH
NT seq
7281 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttctattcggccctctcgggccagattcgctatcttcttcagtccttgaac
gaatccaactctgattctatctttgaagaactctgtcagtatattggatatggaactgag
ggaagcatgttgcttctccaaacctgtttggatcacttaaatatttatgggagagacttg
aagaatatgcaactggaaccaatatttggttcaattttcaaatatatattggataaacca
aatttcagtacagtgctctctgagtccctgagaagtactgtgattaatgaagattttctt
gaaagtctctcaaatgctttaaacttatcagcaactgagaaaattggaattggtcttgct
ttgtcggattcagaaaatctggacatcagtatgtgtgggaagaacttttgcatggctcag
attggggaattatttgccagtcatgcatgtgttgattctgctgaacaaattcagaatatt
tttatgtttcttcatcgatctgagggcctctccaagcatgttgattcattcatgcaaatg
ttatctttagtgcaattgaacaagggtgaccgatttattttagctccattccttctagat
gaattgcgtgaggcaaccttcttgaggaacttcgatttgttcgatgaaagcaatgaagat
gattttgacgctgttctagcagaaatggagaaggagatgagcatggccgatataataaag
gaattgggttatggatgcactgttaatgtctcacagtgcatagagatgctatctcttttc
ttaccgctggctgaaatcactgtctctaggatatttggcacaattgctcgcacacatgct
gggcttgaggacaatcaaaatgcattttcaactttctattctgctcttggcagtggcagt
tcatctgatctgccattattgagttcctggaatattgatgtccttatcgattcaatcaag
cagcttgctcctggaaccaactggataagtgttgtggaaaacctagatcatgagggattc
tacttccccaatgaggcagcatttttctttttcatgtcggtttatagaagtgcatgccag
gatccattcccacttcatgccatctgtgggtctgtttggaagaatacagaaggccagcta
tcttttcttaagtatgctgtttcagtaccacctgaagtgtttacgtttgcacattctgga
aggcagctggcatatgttgatgctgtgcatggtcataaatttcaacttggacatgcaaat
catgcatggttatgtcttgaccttttggaggtgttgtgtcagctagctgagagaggtcat
gcaagttctgttcgatcaatgcttaagcatcctcttgagcactgccctgaagttttgctt
cttgggatggcccacattaatactgcgtacaaccttctccagtatgaagtttcttctact
gtattccccatgattcttaaagatagtatgaggagtggcataattcttcatctctggcat
gttaaccccaatcttttgctgcggggatttttagatgcccacaacattgatccagaaaat
atgagtagagttttggacatttgccaggagttaaagatactctcaccggtattggacatg
gttccttcatgttttggtattagattggctgcccttgcttcccaaaaagaacttatagac
ctggagatgtggctgagttctaatttgagtacttacaaagatatttactttgtggagtgc
cttaaattcctaaaggagattcagtttggcgtatctcaggacgtttctgctgaacatttc
aaccattctggtcgcatttggaacctctatttggagacaagtcctactgtcttgaaggtt
cttcaatatcatacgggcttgattagctctagccagctttctgaggaattggagaaggtg
aatgtaacattcatgcattctacttcaagaatgaagaattctggggctaatgattcatca
ccctctgatggatatgcggaagacattgagacagaagcaaattcttacttccatcagatg
ttttctggtcaactaactattgatgcgatgattcaaatgcttgctcgattcaaggaatct
cctgagaaaagggaacaatcaatttttgagtgcatgattggcaatctatttgaagaatac
aaatttttccccaagtaccctgagaggcagctcaaaattgccgcagttctctttggttct
ctcatcaagcatcagcttgtaactcatctcacccttggtattgccctccgaggtgttctg
gattcactgcgtaaacctgcagattccaaaatgtttgtgtttgggaccaaagctctggaa
cagtttgtggaccgtttgattgagtggccacagtattgcaatcatatcttacaaatatct
catctgcgtggtactcattctgagcttgttgcattcattgaacgggcactttccaggatt
tcagcaggtcatgcagagtcagatggagcacacggtacttctgctgatcaacagcatggt
tctattcaggctactgaaacaaacatggagatgcctggttcatcattcccattgattgca
tctgttagcacgcaacttggatcgcaaatttcttcttcaattcaacttcaacagagacat
caagttcgtttggatgatggtcagaaggcctctggaacttcgtctaactacgtgaagcct
cttacatctactgcagggcagtcttcactcattcctgccagtgatgcagctggcaatcag
aagttacagagtgcatcgagtgcttcatctgtactgtcctcctctactggttttgctcgt
ccatctcgagcaattacctcagcaaggtttggctctgctttaaatattgaaacacttgtt
gctgctgcggagagaagagaaactcctttagaggctccagcctctgagattcaggacaag
atttcgtttattattaataatttatctgctgcaaatgttgaagctaaagcaaaagaattt
actgaatttatgaaagagcagtactatccctggtttgctcagtacatggtaatgaaaaga
gcaagcattgagccaaattttcacgacttgtacttgaagtttctagacaaagttaactca
aagcctttgaacaaagaagttgtacaagccacttatgagaactgcaaggttcttttaggg
tcggatcttataaaatcgagttcagaagagcgttccttgctaaagaatcttggaagttgg
cttgggaagatcacaattggtagaaaccaagtcctgagagcacgtgagattgatcccaag
tctttgatcatagaggcatatgagaagggtttgatgattgcagtaattccattcacttcc
aaggttttggaaccatgccaaagcagtctagcttatcaacctcctaatccttggacaatg
ggtattcttggattacttgctgagatttatgcaatgccaaatttaaaaatgaacctcaag
tttgatatcgaggtcctattcaagaaccttggtgttgatctgaaggacgtaactccaact
tctctgctcaaggacagggtaaggcaacttgaaggaaatcccgacttttccaacaaagac
gttggtgcgtctcaacaacagatggttggtgaagtcaaatctggtacaatatctacccta
aatcaagttgagctaccgcttgaagttgccaccccagctcatcctggtggccattcacat
atattgtctcagtatgctgctcctctccatatatcttctggtgcgttgtcgttgacggag
gatgaaaaactggcagctttaggcttatctgatcagctctcttctgctcaaggactatta
caacgacaatcaccattttctgttagtcagcttccagcgccagcatctaatattgaacaa
caagttattgtaaatccaaagcttcatgcattcggcctgtacatgcactttcagagtgtc
gttccaatcgctatggatagagctatcaaggagatagtatctggcattgtgcagcgcagt
gtttctatagcaactcaaacaacaaaagaacttgttttgaaggattatgccatggagtta
gatgagacacgcatacgtaatgcagcacacttgatggttgccagtttggctggaagttta
gctcatgtaacatgcaaggaacccttacgtggctcaatatcaagtcagcttaggaattca
cttcagggtttaaatattgcaagtgaacttgaacaagctgtgcaacttgttactaatgat
aaccttgatctgggctgtgcactgattgaacaagctgcaacagaaaaggcaatacaaacc
atcgatggggaaatagctcaacaactttctgtaagaaggaagcatagagagggtcttggt
cctgcatattttgattcaggtctgtatgcacaaggtcatgccggagttttaccagaagcc
cttcgccctaaacctggccggttatcccattctcaacaacgtgtttatgaggattttgtt
cggttaccctggcagaatcagtcaaccaatagctcaaatgccctaccagttggcccttcg
gtttcatctgtcagtgctggcatgtcctggacatttaactcagcgtcaggacaactgaac
ccaggcattttctcatctggcataggaaacacaggaattagtgcagtggttcagcccttg
gaccttgtctctgaggagatggattctagttcagctcagcttcatagtgattcctcaact
catattggaacaactgatggagttaattcacaagattttgaaaatgatgctattgttaac
tcattttcttctgtctcatcccctgaattgcattctgtggaaacatccaacattgtaaaa
gaatcggttgcttcttcacagccattaccttcaacatctgtgattgaacgcctaggaagt
agtactccagaacctttgtggaccacaggcgatgcattggagaaatacgagattatttcg
gagaagctggaaactcaagtaactaatgacgctaaagatgcagatattcagggagtaatt
ggtgaggttcctggaatcattctgagatgtgtaagtcgagatgaggccgcattggctgtg
gctcaaaaggttttcaaggggttatatgaaaatgcatcaaacaatacccatgtcgctgct
catctggccattctggctgccattcgtgatgttagcaagcttgttcttaaggaactgact
agctgggtgatctactccgatgaggatcgaaagttcaacaaagatattactattggcctt
attcacaatgaattactaaaccttgcagagtacaatgttcatatggctaagctgattgat
gcaggaaggaataaggctgcaaccgagtttgctatttcccttattcaaacattggtgatt
aatgattccaaagtcatttccgaacttcataatctcgttgatgcattggcaaagcttgcg
gcaaggcctggatctcccgagtcattacaacagctggttgaggttgccaggaatcctgtt
gctaataatgctgctgtgtctgttggcaaggaggatagcaccagacaagctagagagaaa
aaggctcctggtcatgctgtagcaagcagggaagactataatgttgttgagtcaatggaa
cctgatcctgctggttttcgtgagcaggtttcttcgttgtttgtggaatggtacaggata
tgtgaacttcctggtacaaatgatgcagcttgtgcccatttcgtcttacaattgcagcaa
agtggactgctgaaaggagatgatatgtcagatcgttttttccgctccctgatggaactt
tctgtatcgcattgcctatcttctgaggtgattagttctggccctcagcaatcatctcaa
caagtccagcccctctccttccttgctatcgatatctatgcaaaacttgtcttttcaatc
ttaaagttttatccggtggaccagggatcaaacaaactctctcttttgcccaaggttctg
ggagtgactatgagacttgttcagaaagatgcagaggagaagaagtcatcttttaatcca
aggccatatttcaggttgttcattaacttgctgctcgacctgggttcaattgaccttgtc
tttgatggtgcaaactttcaggttttgacagcttttgcaaatgcattccatgctctacag
ccccttaatgttcccggattcagctttgcatggcttgaactggtgagccacagaagtttt
atgccaaaattgctcactggaaacgctcagaaggggtggccatatatgcaacgcttgctg
gttgatttgtttcaattcctggagccattcttgagaaatgctgaacttagagagccggtt
cattttctgtataaaggcacactaagggtgttgctagtgctacttcatgatttccccgag
ttcctctgcgattatcatttcagcttctgtgatgtcattcctccaagctgtatacagatg
cgaaacataatccttagtgcatttcctcgtaatatgaggttaccagacccatctactcca
aatctgaagattgatctgttagctgagatcagtcaatctccgcgtattctctctgaagtt
gatgcagctcttaaagtgaagatgattaagggtgatgtagatgagtatctgaagacaagg
caacaggggtcttcgtttttaactgaattgaaacagaaactgttgcttccaccaagtgat
gctgcccaggctgggacacagtataatgtaccattaatcaactcccttgtgctttatgtt
ggaatgcaggctattcagcagctgcaagcaagaactcctcctcatgcacagtcaatggcc
agtagcgttccattagctgtattcttagttggtgctgccttggacatcttccagacatta
ataatggatctagatactgaagggcgctacctctttttgaatgcaattgctaaccaacta
cgttatccaaacaaccatacacattatttctcgttcatcctcctttacctattcgccgaa
tcaaaccaggaaatcattcaggagcaaattacaagagttctattggaacgcctgatcgtt
aacagacctcatccatgggggcttttgattactttcattgagctgattaagaatcctaga
tacaacttctggagccggtcttttacgaggtgtgcaccggagatagagaaactctttgaa
tcagtctcaagatcatgtgggggaccaaaacctgtagacgagggcgtggtctcaggtggg
atatccgacaacatgcactaa
DBGET
integrated database retrieval system
