Cronobacter sakazakii ATCC 29544: CSK29544_00659
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Entry
CSK29544_00659 CDS
T03903
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csj
Cronobacter sakazakii ATCC 29544
Pathway
csj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSK29544_00659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csj03021
]
CSK29544_00659
03400 DNA repair and recombination proteins [BR:
csj03400
]
CSK29544_00659
Enzymes [BR:
csj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSK29544_00659
Transcription machinery [BR:
csj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSK29544_00659
DNA repair and recombination proteins [BR:
csj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSK29544_00659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
LPD39
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKE93623
UniProt:
A0A2S9U8N6
LinkDB
All DBs
Position
complement(678767..682990)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERSQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKINAKGEGMVLTGPKEAERLYRSG
QAELHARVKVRITEYEKDANGEFVAKTSLIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVARNTLLNEQWCDILEANSVDSVKVRSVVTCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGYIRFTDMIDGQTITRQTDELTGLSSLVVLDSSERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEVAGIVSFGKETKGKRRLVITPVDGGDAYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVQAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIMDAGSSEFLEGEQVEYSRVKIANRELEANGKVSATYMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGNDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcgtcgccagacatgatccgttcctggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaaaccggagcgcgatggtctgttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatttgtgagaagtgcggtgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccatatcgaactggcttccccgaccgcgcacatctggttcctgaaatcactg
ccgtcccgtatcggtctgctgctggatatgccgctacgcgatatcgaacgtgtactgtat
ttcgaatcttacgtggttatcgagggtggcatgaccaacctcgagcgcagccagatcctg
actgaagagcagtacctggacgcgctggaagagttcggtgacgagttcgacgcgaaaatg
ggcgccgaagctattcaggctctgctgaaaagcatggacctggaagccgagtgcgagcag
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgc
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgccagtgctgccgccggatctgcgtccgctggttccgctggatggcggtcgtttc
gcaacgtcggatctgaacgatctatatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggcggcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtccgctgaaatcactggcagacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgtggactactctggtcgttccgtaattaccgtaggtccgtac
ctgcgtctgcaccagtgcggcctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagcggtcgtttgggatatcctggacgaagttatccgtgagcacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtattcaggcgttcgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcttataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgcgacaagattaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagcggaacgtctgtaccgctcaggc
caggctgaactgcacgctcgcgtaaaagttcgtatcactgaatacgaaaaagacgcgaac
ggcgagttcgttgcgaaaaccagcctgatcgacaccacggttggccgtgccatcctgtgg
atgatcgtaccgaaaggtctgccgttctctatcgtgaaccagccgctcggtaaaaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttattttt
gctgaccagaccatgtataccggttttgcgtatgcagcacgttctggtgcgtccgttggt
atcgacgatatggttatcccggcgaaaaaagccgagatcatcgccgaagccgaagcggaa
gtggccgaaatccaggagcagttccagtctggtctggttaccgcgggcgaacgctataac
aaagtcatcgatatctgggccgcggcgaacgatcgcgtatccaaggcgatgatggacaac
ctgcagaccgaaaccgttatcaaccgtaacggcgaagaagagcagcaggtttcctttaat
agcatctatatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctcgacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gttgacgtcgcgcaggatctggttgtgaccgaagacgattgcggcacgctggaaggcatc
accatgaccccggttatcgagggtggcgatgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtaacggcagaagacgtgctgaagcctggcactgcggacattctggttgcgcgc
aacacgctcctcaacgagcagtggtgtgacatcctggaagctaactccgtagacagcgtt
aaagttcgctccgtagtaacctgtgacaccgacttcggcgtctgtgcgcactgctatggt
cgtgacctcgcgcgtggccacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtactcagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaacgcgaagtcggttgttaactccagcggtaagctggttgttacttcccgtaacacc
gagctgaaactgatcgacgaattcggtcgtactaaagaaagctataaagtgccttacggt
gctgttatggcgaaaggtgacggcgagcaggtcgcaggcggcgaaaccgtcgcgaactgg
gatccgcataccatgccggttatcaccgaagtggcgggttacattcgtttcaccgacatg
atcgacggccagaccattactcgtcagactgacgagctgaccggtctgtcttcgctggtg
gttctggattcttcagaacgtaccgcgggcggtaaagatctgcgtccggcgctgaaaatt
gtcgacgctaacggtaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggtaaagcaattgttcagctggaagatggcgttcagatcagttccggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccggcaatccttgctgaagtggcg
ggtatcgtctccttcggtaaagaaaccaaaggcaaacgtcgtctggttatcaccccggtt
gacggcggtgacgcatacgaagagatgatcccgaaatggcgtcagctcaacgtgttcgaa
ggcgaacgtgtggaacgtggtgacgtgatctccgatggtccggaagcgccgcatgacatt
ctgcgtctgcgtggcgttcaggcggtgacccgttacatcgttaacgaagtgcaggacgtt
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcatggacgcgggcagctccgagttcctggaaggtgagcaggtt
gaatactctcgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaagtcagcgcg
acttacatgcgcgacctgctgggtatcaccaaagcgtctctggctaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgcgtgctcaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggttacgcgtaccaccaggatcgtatgcgccgtcgcgctgcgggtgaactcccggca
gcaccgcaggtgactgcggaagacgcttctgcaagcctggcagagctgctgaacgcaggt
ctgggcggcaacgacaacgagtaa
DBGET
integrated database retrieval system
