Cronobacter sakazakii ES15: ES15_3630
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Entry
ES15_3630 CDS
T02119
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
csk
Cronobacter sakazakii ES15
Pathway
csk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ES15_3630 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csk03021
]
ES15_3630 (rpoB)
03400 DNA repair and recombination proteins [BR:
csk03400
]
ES15_3630 (rpoB)
Enzymes [BR:
csk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ES15_3630 (rpoB)
Transcription machinery [BR:
csk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ES15_3630 (rpoB)
DNA repair and recombination proteins [BR:
csk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ES15_3630 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AFK01204
LinkDB
All DBs
Position
complement(3937926..3941954)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDEIKHIEVPVEYIAGKVAAKD
YVDASTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTTDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLTEEGRFADDLVTCRSKGESSLFSADQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGIVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLNEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLIAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKRQEEVAK
LREFIQKAYDLGQDVRQKVDLNTFSDDEVLRLAENLRKGMPLATPVFDGAKEAEIKELLQ
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgttccctatctcctttctatccagcttgactcgttccagaaatttatcgag
caagatcctgagggtcagtacggcctggaagcagctttccgctccgtattcccgatccag
agctacagcggcaattcggaactgcaatacgtcagctaccgtcttggcgaaccggttttt
gatgttaaagaatgccaaatccgtggcgtgacctattcggcaccgctgcgcgttaagctg
cgtctggtgatctacgagcgcgaagcgccggaaggcactgttaaagacatcaaagagcaa
gaagtttacatgggcgaaatcccgctcatgaccgataacggtacctttgtcatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagcccgggcgtgttctttgacagcgac
aagggcaaaacccactcctctggtaaggtgctgtataacgcacgcatcattccttaccgt
ggctcctggctggacttcgaattcgatccgaaagacaacctgtttgtccgtattgaccgt
cgtcgtaagctgccggcaactatcatcctgcgcgcgctggattacaccactgagcagatc
cttgacctgttcttcgagaaagtggttttcgaaatccgcgacaacaagctgcagatggag
ttgattccggagcgtctgcgtggtgaaaccgcgtcctttgatatcgaagcaaacggcaaa
atttacgtagaaaaaggccgtcgtatcactgcgcgtcatatccgccagctcgaaaaagac
gaaatcaaacacatcgaagttccggttgaatacatcgccggtaaagtcgctgcgaaagat
tatgtggatgcttccactggcgagctgatttgcccggccaacatggaactgtctctggat
ctgctggcgaaactgagccagtctggtcacaaacgtatcgagacgctgttcaccaacgac
ctcgaccacggcccgtatatttctgagactgtccgcgtcgacccgaccaccgatcgcctg
agcgcgctggttgagatctaccgcatgatgcgtcctggcgagccgccgacgcgtgaagcg
gcagaaagcctgtttgagaacctgttcttctctgaagaccgttacgatctgtctgcggtt
ggccgcatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttccggtatcctg
agcaaagctgacatcatcgacgtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg
gaaaaccagttccgcgttggtctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgccgcaggatatgatcaacgccaagcctatctccgcg
gcggtgaaagagttcttcggttcaagccagctttctcagtttatggaccagaacaacccg
ctgtctgagatcacgcacaagcgtcgtatctctgcactcggcccgggtggtctgacgcgt
gagcgcgcaggcttcgaagttcgagacgtacacccgacccactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacattggtcttatcaactccctgtccgtgtacgcgcag
actaacgagtatggcttccttgagacgccgtaccgtaaagtgaccgacggtgtggtgact
gatgaaattcattacctctccgctatcgaagaaggtaactacgttatcgcgcaggcgaac
accaacctgaccgaagaaggccgcttcgccgatgatttggtcacctgccgcagcaaaggc
gaatccagcctcttcagcgcagaccaggttgactatatggacgtttccacccagcaggta
gtttctgtcggtgcgtccctgatcccgttccttgagcacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgaccctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgctgttgccgttgactccggcgtaaccgccgtggccaaacgt
ggcggtatcgttcagtacgtggatgcgtcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgaccaaatacacccgttctaac
cagaacacctgcatcaaccagatgccgtgcgtgtctctgaatgaaccggttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccattctcgtttccgag
cgtgttgtccaggaagaccgtttcaccacgattcacatccaggaactggcgtgcgtatct
cgtgataccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagcc
gcgctctctaaactggatgaatccggtatcgtctacatcggcgcggaagtgaccggcggc
gacattctggtgggcaaggtaacgccgaaaggtgaaacccagctgacgccggaagagaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgttcaggtctttacccgcgatggcgtggaa
aaagataaacgtgcgctggaaatcgaagaaatgcagctcaagcaggccaaaaaagacctg
tctgaagaactgcagatcctcgaagccggtctgttcagccgtattcgcgctgtactgatc
gcaggcggcgttgaagccgagaagctcgacaaactgccgcgcgaccgctggctggaactc
ggcctgaccgacgaagagaaacagaatcagctggaacagctggctgagcagtacgacgaa
ctgaagcacgagtttgagaagaaactcgaagcgaaacgccgcaaaatcacccagggtgac
gatctggcgccgggcgtgctgaagatcgttaaggtgtatctggccgttaaacgtcagatc
cagccgggcgataagatggcaggccgccacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctggaaactcacctgggtatggcg
gcgaaaggtatcggcgataagatcaacgccatgctgaagcgtcaggaagaagtcgcgaaa
ctgcgtgaattcatccagaaagcttacgacctcggccaggatgttcgtcagaaagttgac
ctgaacaccttcagcgatgatgaagtactgcgtctggctgaaaacctgcgtaaaggtatg
ccgcttgccacgccggtattcgacggcgcgaaagaagctgaaattaaagagctgctgcag
ctgggcgacctgccgacttccggtcagatcaccctgttcgatggccgtactggtgaacag
ttcgagcgtccggtaaccgtaggttacatgtacatgctgaaactgaaccacctggttgac
gacaagatgcacgctcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggccagcgcttcggtgagatggaagtgtgggcgctggaagct
tacggcgccgcctacaccctgcaggaaatgcttaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaaccatcagatggaaccgggcatgccg
gaatcgttcaacgtactgttgaaagagattcgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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