Coccomyxa subellipsoidea: COCSUDRAFT_47765 Help Entry COCSUDRAFT_47765  CDS       T02914                                  Name (RefSeq) Not1-domain-containing protein   KO K12604   CCR4-NOT transcription complex subunit 1 Organism csl  Coccomyxa subellipsoidea Pathway csl03018   RNA degradation Brite KEGG Orthology (KO) [BR:csl00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     COCSUDRAFT_47765  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:csl03019]     COCSUDRAFT_47765 Messenger RNA biogenesis [BR:csl03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      COCSUDRAFT_47765   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      COCSUDRAFT_47765 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Not1 CNOT1_CAF1_bind DUF3819 CNOT1_TTP_bind CNOT1_HEAT ARM_Cnot1 NOT1_connector Motif Other DBs NCBI-GeneID:  17040140 NCBI-ProteinID:  XP_005646698 JGI:  47765 UniProt:  I0YUT5 LinkDB All DBs AA seq 1996 aa AA seqDB search MEEAGPSCTASQAAFRELLEKHAVIDEATAARIFALVARHHGGKADTDDSSQAALAATLA TLSLSHPASVDSAWNLDVLLSGLAPDLAKLSPQRIAEQLDHDSFALPDARAFLLLMSLWR RATGDNAFPLAPAIQCVWKNAPGQIAFLRFASAAPPEVFSFEGAQRKLAPVEGLQGNKSP MGTPNQAWLALDLLSTLSFLYEAGHGAVVRQILELPLAQCPEVLVLGFASARSDWSALAR DACDAFVVKSIASGPNSAVVLPRLWAASREALLRNIVALYEKDANNISRVLDVCQELKAL TDVLEATPFAFALELAALAARREYLNLEKWLQERMAVHGVPFIQAALKFLDAKLTGPPRP EGPQASRVPLSAESRAILLRVLAGAAPNLAPEVAAEVARLTSIAQGVAVPGLPAVPSQPL FPQDVEDEANDNFQKVYQGKETSDHLLARLQAFKQGSTKEQQVYACMVHNLFDEYRFFPK YPEKERHITALLLGGLVQRGLVDGNNLRLALQLMLTAVKEQSPKMLTFGVNALLVCQERL TSFPQICQAVLQVPAVREVSPELAQLCERVVAAIDPAAAAAEAAKPPLPPAAEAKAAEAP DAATKPKVQNGGGLERGSPGATLEAQPFPQTPPGMNASGVVGSGGSVGSLTPAQAGLAMD PNRAFQALNAETLEQASENVDYPVPPQNVQDKVAFFVNNLSTSNLGPKAADIKKVLTPES WPWFANYMVVKRAAQEPNFHGLYIELMDSIGDKELQANLLETTYKYVRILLRSERVRTHT GERSLLKNLGSWLGRLTIARSKPVRHRDLDLKGIIYEAYEQGRMIAVLPFVNKVLEPCKD SKVFKPPNPWVQSILALISDAKPSSTLAAHKRQIVNNTDFAQDKVVAAPIITTTAQPASM TVTGAQRPPTPQQVAPGPPPVGVPPPAPPVGTVPANLPPIRTAPPAPDAAPAPDGPPPVL PNVEQGLLANLHNYVQINAGQLGRIAERCKRIVPIAVDRAIVELINPIVEKSVTTACMTT HELVSKDFAFESDGQRMRKAAHLMVTSLAGSMALVSCRDAMRASLSSQLRALLADLTGTA AIEEEELDHAVNLLTNDNLELACTVIEKTATDKAIREIDERLLPAYQARAKARAAGQEFM DRTVLQGRFPMQLPPALLPRGQLSPPQQLVYEDFARIPRTAPAAQPAPPSKPASMAGSIE TAASLGSGVHAQLAGPGSIGDGAPIGAATRGLDEVLRQLQEKYTLWQQRLDAHVEQDPQA VYRELPREHELLSVVAEIAEIAGGREDAVLLLARKIFTRLFEVQNARLHTGASVAALTIL RDSALKRLPAELTALWVAMIDERKWRRDAGEALVRARLFQAPDLDAHLAKVLSSGRLGAP PLEFAAHVVKACIVSEPVLAAADLFNTLEMLAKLARTSPQGPAMQALVDQARRPKSTPPV PGPEASDPAGLRQQAIGLFEAFVRACEEQPAERRHDAFVAQLQAANLLKLDDLTERFFRI LTELAVRHCVNSESGGAPGAPGAVSFMATDALARLVVTLVIAHSGGLDLLSRVLGVVAGC LQREATARGDAFNGRPYFRILLGLVCELSPAEPAAPEELPAMKMLAAIAVTLEGVQPVRV PGFAFQWLELISHRHGPSLTRSLQKRGSAKFWVVPRHLMPKLVLAGGQAGWPHLERLLVA LLRFLEPYLRNADLTDAIRNLYKGTLRVLLVLLHDFPEFLCEYHFELCNVVPPSCIQMRN LILSAFPRNMRLPDPFTPNLKVDLLSEITVAPSYRPEAAALLPAGLRAEVDAYMASRQPA SFLASLKQRLLLPQHETILCGTKYSQPLLNALVFYVGIRATEALKGAQPVMHAPAVDVFQ RLAGDLDTEGRYLFLNALANQLRFPNSHTHYFSCVLLFLFSEAQQEIVQEQITRVLLERL IVNRPHPWGLLITFIELIKNPRYNFWSLSFTHCDAEIERLFESVAQSCMGPHKAAEQQQQ AQPPPPGQPQMQSVGA NT seq 5991 nt NT seq  +upstreamnt  +downstreamnt atggaggaggcggggccgagctgcacagctagccaggccgccttcagggagctgctggag aagcacgccgtcatagacgaggccacagcagcgcgcatctttgcactggtggcccggcat catggcggcaaagctgacaccgatgactcatcccaggctgcgctggccgccacgctggcg acgctgtcgctgagtcatcctgccagcgtggacagcgcgtggaacctggacgtcctgctg tccggcctggcgccagatctggccaagctgagcccccagcggatcgcggagcagctggac catgactcattcgcgctgcccgacgcgcgtgcattcctgctgctgatgtcactctggcgg cgcgccacgggggacaatgcgttccctctggctccggccatccagtgtgtgtggaagaac gccccgggacagatcgccttcctgcgcttcgccagcgccgcgccgcccgaggtgttcagc ttcgagggcgcccagcgcaagctcgcacccgtggagggcctgcagggcaacaagtcgccg atggggacgccgaaccaggcatggctggcgctggacctgctctccacgctctcgttcctg tacgaggccggccacggagcggtcgtgcgccaaatattggaactaccgctcgcgcagtgc cccgaagtcctggtgcttggcttcgcctctgcgcgcagtgactggagcgcgctggcgagg gacgcgtgcgacgcgtttgtggtgaagagcatcgcgtcggggcccaactcggcggtggtg ctgccgcggctgtgggctgccagccgcgaggcgctcctgcgcaacatcgtggcgctgtac gagaaggacgccaacaacatcagccgcgtgcttgacgtatgccaggagctgaaggcactg acggatgttttggaggcgacgccgtttgcatttgcgctggagctggcggcgttggccgcg cggcgcgagtacctcaacctggagaagtggctgcaggagcgcatggcggtgcacggcgtt cccttcatccaggctgccctgaagtttctggacgcaaagctgacgggaccccctcgtccc gagggaccccaggctagcagggtgcctctctcagcggagtccagggccattctgctgcgc gtgctggcgggtgcagcgcctaatctggcgcctgaggtggccgctgaggtagcgcgactc acctccatcgcgcagggtgtcgccgttcctggtctccccgccgttccctctcagccgctg ttccctcaggacgtcgaggacgaggcaaatgacaacttccaaaaggtgtaccagggcaaa gagacgtcagaccatttgctggcgcggctgcaggcattcaagcagggcagcaccaaggag cagcaggtgtacgcctgcatggtgcataacctcttcgacgagtaccgcttcttccccaag taccctgagaaagagcgccacatcaccgccctgctcctcggcggcctggtgcagcgcggc ctggtggacggcaacaacctgcgcctggcgctgcagctgatgctgacggccgtgaaggag cagtcccccaagatgctcacattcggcgtcaacgcgctgctggtctgccaggagcggctg acttccttcccccagatctgccaggcagtcctgcaggtgccagctgtcagggaagtcagt ccagagctggcgcagctgtgcgagcgggtggtggcagccatcgaccccgcagcggctgcc gcggaggcggccaagccgccgctgccgcccgctgcggaagccaaggccgcagaggccccc gacgctgcaaccaagcccaaggtgcagaatggaggggggttggagcggggtagcccgggt gcgacgcttgaggcgcagccgttcccacagacgccgccgggcatgaatgccagcggcgtg gtgggcagcgggggcagcgttggtagcctcacacctgcccaggcgggcctggcgatggac cccaaccgcgccttccaggcactcaacgccgagacgctggagcaggccagcgagaatgtt gactaccctgtacccccccagaacgtgcaagacaaggtggcgttcttcgtgaacaacttg agcacgtccaacctgggccccaaggcggccgacatcaagaaggttctgacgcccgagtcc tggccctggtttgccaactacatggtcgtcaagcgcgccgcccaggagcccaacttccac ggcctctacattgagctgatggactccattggcgataaggagctgcaggcgaatctgctg gagaccacctacaagtatgtgcgcatcctgctgcgcagcgagagagtgcgcacgcacaca ggcgagcgttccctcctcaagaacctcggctcctggctcggccgcctgaccatcgcgcgc agcaaacccgtccgccaccgggacttggacctgaagggcatcatctatgaggcctacgag cagggcaggatgattgccgtgctgccctttgtcaacaaggtgctggagccgtgcaaggac agcaaggtgtttaagccgcccaatccctgggtgcagagcatactggcgctgatctccgac gccaagcccagcagcacgctcgccgcacacaagcgccaaattgtcaacaacaccgacttc gcgcaggacaaggtcgttgcggcaccgatcatcaccacaacggcgcagccggcctcaatg accgttacgggcgcgcagcggccgccaacgccgcagcaggtggcgccgggacccccccct gtcggggtccccccgccggcaccccctgtcggcacggtccccgcgaacctaccgcccatc cgcaccgcgccccccgctcccgacgccgccccggcccccgatggcccaccgcccgtgctg ccgaatgtggagcagggcctgctggcaaacctgcacaactacgtgcagatcaacgcgggc cagctggggcgcatcgcagagcgctgcaagcgcatcgtgccgatcgccgtggaccgcgca atcgtggaactgatcaatcccatcgtggagaagtctgtcaccactgcctgcatgaccacg cacgagctcgtgtccaaggactttgcgtttgagtcggacgggcagcgcatgcgcaaggcg gcgcacctgatggtgaccagcctggccggcagcatggcgcttgtgtcgtgccgcgacgcc atgcgcgcatcgctctcctcccagctgcgcgcgctgctcgccgacctcaccggcaccgcc gccatcgaggaggaggagctggatcatgcggtgaatctgctgacgaacgacaacctggag ctggcgtgcaccgtcatcgagaagactgccaccgacaaggccatccgcgagatcgatgag cgcctgctgccagcctaccaggcgcgtgcaaaggcgcgcgcggcggggcaggagttcatg gaccgcacggttctccagggacgcttcccgatgcagctgccgccggcgctgcttccgcgc ggccagctgagccccccgcagcagctcgtctacgaagactttgcgcgcatcccccgcacc gccccagctgcgcaaccggcgccgccgtccaagccggcgtcgatggcgggcagcattgag acggcggcctcgctgggctcgggcgtccacgcgcagttggccggccccggctccatcggc gacggcgcgcccatcggcgcggccacccgcggcctggacgaggtgctgcgtcagctgcag gagaagtacacgctgtggcagcagcgcctggacgcgcacgtggagcaggacccgcaggcg gtgtaccgcgagctgccgcgcgagcatgagctgctgagcgtggtggccgagatcgcggag atcgccggcggccgcgaggatgctgttctgctgctggcgcgcaagatcttcacccgcctc tttgaggtccagaacgccaggctgcacacgggcgcgagcgtggctgcgctaacaatcctg cgcgactcggcgctgaagcggctgccggctgagctgacggcgctgtgggtggccatgatc gacgagcgcaaatggcgccgcgacgcgggagaggccctcgtgcgcgcgcgcctcttccaa gcccccgacctcgacgcccacctggccaaggtgctcagcagcgggcggctgggagcgccg ccgctggagtttgcagcgcacgtggtgaaggcgtgcatcgtgtcggagccagttctggcg gctgcggacctgttcaacacgctggagatgctggccaagctggcgcgcacctcccctcag ggacccgccatgcaggcactcgtcgaccaggcccgccgccccaagtcgacaccgccggtg ccgggcccggaggcgagcgacccggcggggctgcggcagcaggcgatcggtctatttgag gcgtttgtgcgtgcgtgcgaggagcagccggccgaacgccgccacgacgcctttgtcgcg cagctgcaagccgctaacctcctcaagttggacgatctgacggagcgcttcttccgcatt ctgacggagctggcggtgcgccactgcgtcaacagcgagagcggcggcgcaccgggcgcc ccgggcgccgtctccttcatggccaccgacgccctcgcgcgcctcgtcgtcacccttgtc atcgcgcacagcgggggactggacctgctgagccgagtgctgggggtggtagccggctgc ctgcagcgggaggcgacggcgagaggggacgccttcaacgggcgcccctacttccgcatc ctgctcggcctcgtctgcgagctgtcgcccgccgagccggccgcgccggaggagctgcct gccatgaagatgctggccgcaattgcagtcaccctggagggcgtgcagcccgtgcgcgta ccgggcttcgccttccagtggctggagctcatctcgcacaggcatggcccctccttgact cgttctctccaaaaaagagggtcagccaaattttgggtggtgccaaggcatctgatgccc aagctggtgctggctggcggtcaggctggatggccccatctggagcggctgctggtggcg ctgctgcgattcctggagccctacctgcgcaacgccgacctcaccgacgccatccgcaac ctctacaaggggacgctgcgcgtgctgctggttctcctgcacgactttccggagttcctg tgcgagtaccactttgagctgtgcaacgtggtgccgccctcgtgcatccagatgcgcaac ctcatcctctcagccttcccccgcaacatgcgcctgcccgacccattcacccccaacctc aaggtggacctgctgtcggagatcacggtggcgcctagctaccggccggaagctgcggcg ctgctgccggcggggctgcgcgctgaggtggacgcctacatggcgtcgcggcagccggcc agcttcctggccagcctgaagcagcggctgctgctgccccagcacgagaccatcctgtgc ggtaccaagtacagccaacccctgctcaacgccctcgtcttctacgtcggcatccgggcg acggaggcgctgaagggcgctcagcccgtgatgcatgcgccggcggtggatgtgttccag cggctggcgggtgatctggacacggaggggcggtacctcttcctgaatgcgctggccaac cagctgcgcttccccaactcccacacccactacttctcctgcgtcctcctcttcctcttc tccgaggcccagcaggagatagtgcaggagcagataacgcgcgtgctgctggagcggctg atagtgaatcggccgcacccctggggcctgctcatcaccttcatcgagctgatcaagaac ccgcgctacaacttctggtccctctccttcacccactgcgacgccgagatcgagcgcctc ttcgagtcggtcgcccagtcctgcatggggccccacaaggccgccgagcagcagcagcag gcgcagccgccgccgccgggccagccgcagatgcaatctgtcggcgcgtga

DBGET integrated database retrieval system