Coccomyxa subellipsoidea: CospP_p061 Help Entry CospP_p061        CDS       T02914                                  Symbol rpoB Name (RefSeq) RNA polymerase beta chain   KO K03043   DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Organism csl  Coccomyxa subellipsoidea Pathway csl03020   RNA polymerase Brite KEGG Orthology (KO) [BR:csl00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     CospP_p061 (rpoB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:csl03021]     CospP_p061 (rpoB)    03400 DNA repair and recombination proteins [BR:csl03400]     CospP_p061 (rpoB) Enzymes [BR:csl01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      CospP_p061 (rpoB) Transcription machinery [BR:csl03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      CospP_p061 (rpoB) DNA repair and recombination proteins [BR:csl03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       CospP_p061 (rpoB) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 Dicer_dimer Motif Other DBs NCBI-GeneID:  10200610 NCBI-ProteinID:  YP_004222037 UniProt:  E9NPV9 LinkDB All DBs Position PT AA seq 1449 aa AA seqDB search MAAINYKASFLVPDFVEIQRRSFSRFLEKGIIEEFSKINPIRSDISKFELTLYPESYLII APEYTVTEAVLHGKTYSCKLYLPAKLSSEHRSKRTNRNKANAKQQVLGPQQATGGRPLAD ESKSSPPVRRSAEPLGDLGGLWTSPQHDANKADIPRTVSLKESHQLAKPEESYGPVSPRV TESVSAIPSLSKPELPEARLPLPRADASNPLWQATRAGSPMGPSDTLNSCEGRPGAVTPW MGRVPQRPARRSSWVKGLTPFEPEALLPVPSGSARVDAARPYKAWPTAGLGRKTGGGLVG HPSDGMPNTGEAWTSKASQGQGPTPKGVPSDGSALGKRSETPLSWVLVGNLPLMTKRGHF IVNGSPRVVINQLVRSPGVYFHERTWGFGKRKKRTVYADFVSRRGAWLRIQTDKEGNTWA RLKKTPKVPFALFHEGMSICERKPNEWTIADREALLELHEEVNPTKKDLSPENGHQFLVQ KFKNPRTYDLGRVGRKRLNRRFGLSVLSHQLTSHDLYAAFEQIQELQNDQILVDDIDHLK NRRVRASGELVQGQFETGLYRLEKAILSKMRKPPKELSPRTLLNTKPLNGALREFFGSSP LSQYMDQTNPLAEITQKRRISSLGPGGISRETAGMAVRGIHPTHYGRICPIETPEGKNAG LVNSLTTYTRVGDDGILETPYYRVVQGQVQTQMGFQYFSAGGEEHGEFRVAPGDVQLSTC QLLPATSFPVREAGNREEDFRHADREDVNYMAISPIQMISVATSLIPFLEHDDANRALMG SNMQRQAVPLLQPERPLVGTGLEAVVVAESGHALQAELSGYVSSVSGGRVSVYSCLPSTR SKPPLTNTRLRWPSLTGAGLTGLTGLPGAGLTGLTGAGRSVGRVQPNDLALQASQASQGQ GPTPKGVPLDGFRVSLNKTGPLPPHWPGSDAQGHQARVAFQPLKGKSLSLKGVVDPSAGP TRQCPPNSQADLPSAAFSRDYHLQRYHRSNQETCLTQTSAVSEGDWVQSGDLLADCSASR FGELALGKNILIAYLPWEGYNFEDAVVISERLISDDVYTSIHVQKYDIETRETRFGVEKI TRQIPGITDREKEHLDWRGIAKIGSWVKEGDILVGKVSPKSSQPLSPYERLAYDIANVEA ATTEDTSLRVPKSVEGRVINCQFFEGPGVTIEKQGPSTGRVRIYLAEKRKLQVGDKVAGR HGNKGIVSTVLPRQDMPYLPDGTIVDMVLNPLGIPSRMNVGQVFECLLGLAGVQLGQQFK ITPFDEIYGAEASRSLVYLKLYQARLRTNQDWLFNSRFPGKTPLLDGRTGRLFDQWITVG YAYMLKLVHLVDEKIHARSTGPYSLVTKQPLGGRSKHGGQRLGEMEVWALEGFGAAYTLQ EMLTSKSDDVVGREQVVEAILFKGRMSLGNPEAFKVLVRELQSLCLDVGVYVISPGRLQR EAVDIGRIP NT seq 4350 nt NT seq  +upstreamnt  +downstreamnt atggctgcaataaattacaaagcatcattccttgtccctgattttgttgagattcaacga cgaagtttttcacgattcttggagaaaggcatcatagaggaattctctaaaataaatccc atccgaagcgacatttcaaagtttgagctgaccctctatccagagagttatctgataatc gcgcccgagtacacggtcactgaagcagtcttgcatggcaaaacatatagttgcaaattg tatttaccagcaaaactctcttccgagcacaggtccaaacggacaaatcgaaacaaggcc aatgccaagcaacaggttttgggcccacaacaagctactgggggacgtcctttagccgac gagagcaagtcaagcccacccgtccgacggagcgccgaacccttgggagacctgggaggc ctgtggacaagcccccagcacgatgcaaacaaggccgatatacctaggaccgtgagctta aaggagagtcaccagttggccaaaccggaagagagctacgggcctgtttccccccgcgta acagaaagcgtgagcgcaattccgagcctgtccaaacctgagctgccggaggctcgtctt ccccttccgagggcagacgcctccaatcctctatggcaagcaaccagggcaggcagccca atgggcccaagtgacacattaaattcatgtgaggggcgccccggtgcagtgacgccttgg atgggtcgggtcccgcaacggcccgctcgccgatcgagttgggtcaagggcctcacgccc ttcgaacccgaagccctgctgcctgtgcctagtggatcagcccgtgtagatgctgcccgg ccatacaaggcctggccaactgcggggctaggcagaaagacaggcggggggttggttggc cacccgtctgacggaatgccgaacaccggtgaagcctggacatcgaaggcctcacagggg caggggcccacgcccaagggcgttccgtcggacgggagcgcattggggaagaggtccgag acgccactttcctgggtcttagtgggcaacctgccgctgatgacaaaacgcggtcatttt attgtcaacggctcaccgcgtgtggtgataaatcagctcgtccgatcacccggtgtctac ttccatgagcggacatggggcttcggaaagaggaagaagcggaccgtgtatgcggatttt gtgtcgcgccggggtgcatggcttagaatacaaactgacaaggaaggaaacacgtgggct cgattaaagaagacacccaaggtgccatttgcgctcttccacgaagggatgtcgatctgt gagcgaaagccaaacgagtggaccatagcagacagagaagctttgttagagcttcacgag gaggttaaccctactaagaaagatctttcgccagagaatggccaccaattccttgttcaa aagttcaagaacccaaggacctatgacctcggcagggttggtcgcaaacggctaaacagg cggtttggtctctcagttttgagccatcagcttacaagccacgatctatatgctgcattt gaacagatccaagaattgcagaatgatcaaatccttgttgatgacatagatcatctaaag aaccgtcgggttcgtgcgtcaggagagctagtgcagggacaattcgaaactggtctctat aggttggagaaggcaatccttagcaagatgaggaagccaccaaaggagttatccccgaga actcttctcaacacaaagccattgaacggagcactgcgagaattctttgggtcaagccca ctttctcaatacatggaccaaaccaacccattggccgagattacgcagaaacgtcgaatt agctcacttggccccggtggaataagccgcgaaacggcaggaatggctgtgcggggcatc cacccgacccattacgggcgcatttgccccattgagacaccagaagggaagaacgcgggc cttgtcaactctttaaccacatacacacgagttggggatgatggtattttagaaacgccc tattaccgcgtcgtacagggtcaagttcaaacacaaatgggcttccaatacttctcagct ggtggggaagagcacggcgagtttcgagtggccccgggtgacgttcagctttcaacctgc cagctgcttcccgcaacatcatttcccgttcgggaagctggcaatcgcgaagaggacttc aggcacgcggatcgtgaggacgtgaattacatggccatctcacctattcaaatgatctcc gtagcaacctccttgatcccgtttctagaacacgatgacgcgaaccgtgcccttatggga tctaacatgcagcgacaggcggttccactccttcagccagaacgccccctcgtaggtaca ggtttggaggcggtggttgtggcagaatcgggacatgctttgcaagctgaattgagtggg tatgtctcgtctgtaagtggcggaagggtatctgtttacagttgtttgccgagcactagg agcaagccgcctttgacaaacactcgacttcgatggccaagcctcacaggtgcaggcctc acaggcctcacaggcctcccaggggcaggcctcacaggcctcacaggggcagggcgttcc gtcggacgggttcagccaaacgaccttgccttacaggcctcacaggcctcacaggggcag gggcccacgcccaagggcgttccgttggacgggttccgcgtttcgctgaacaagaccggg cccctgcctcctcattggcctggctctgatgcgcaagggcatcaagcacgggtggccttc caacccctgaaaggcaaatcactttcgctgaagggtgtggtagacccatcagcgggacct accaggcaatgtcccccaaattcgcaagctgatttgccatcggctgcgttctctcgagac tatcacttgcaaaggtatcaccgctctaaccaagaaacctgcctaacccagacctctgct gtttcggaaggtgattgggtgcagagcggagacctattggcagattgttccgcgagcagg tttggtgaactcgccctcggcaaaaacatcctcattgcgtacttgccatgggaagggtac aactttgaagatgctgtcgtgataagtgagcggctcatttctgacgatgtctacacgtca atccatgtgcaaaaatatgacatcgagacacgagaaactcgctttggcgttgagaaaata acgcgccaaatcccagggataaccgatagagagaaggaacatttggattggcgaggcatt gccaagattgggagttgggtcaaggaaggagacatcctcgttggcaaggtcagcccaaaa agctctcaacctctctcaccctacgaacgccttgcatacgacattgccaatgttgaagca gcaaccacagaagacacatcactacgtgtgccaaagagcgttgaagggagagttatcaac tgccagtttttcgaggggccaggcgttaccatcgaaaagcaggggccaagcactgggcgt gtccgcatctatctagcagagaagagaaagctgcaggttggcgacaaggtggctggacgg catggtaacaagggaattgtttctacggtgttgccacgtcaagatatgccctatcttcca gatgggactatagttgatatggtgctcaatcccctggggataccctcccgaatgaatgtg gggcaagtgtttgaatgtctccttgggctggcaggcgttcaacttggacaacaattcaag atcacaccctttgatgagatctatggggcggaagcttctcgcagccttgtttacttgaaa ctctatcaagctagattgcggaccaatcaagattggttgttcaattcacgattcccaggc aagacaccccttcttgatggcagaactgggcggctgttcgaccaatggataacagtgggc tatgcatacatgctcaagcttgtccatttggtagatgagaagattcatgcgcgctccact ggcccatactcattggtaacgaagcaaccattaggcggacgatcgaaacacggtggccaa cggctaggggagatggaagtctgggcactagaggggtttggcgccgcgtacacgcttcag gagatgcttacaagcaaatcggatgatgttgttggccgcgagcaggtggtcgaagctata ctgttcaagggaaggatgtccctcgggaatccagaggcattcaaggtgttagttcgtgaa ttgcaatctttatgccttgatgtgggagtctatgttatatcacccggccgactgcagcgc gaagctgtagatattggaaggatcccctaa

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