Clostridium cf. saccharolyticum K10: CLS_36090
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Entry
CLS_36090 CDS
T02614
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cso
Clostridium cf. saccharolyticum K10
Pathway
cso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLS_36090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cso03021
]
CLS_36090
03400 DNA repair and recombination proteins [BR:
cso03400
]
CLS_36090
Enzymes [BR:
cso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLS_36090
Transcription machinery [BR:
cso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLS_36090
DNA repair and recombination proteins [BR:
cso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLS_36090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CBK78758
LinkDB
All DBs
Position
3456050..3459919
Genome browser
AA seq
1289 aa
AA seq
DB search
MEKSRMRPAKAGKGIRMSFSRQKEVLEMPNLIEIQKNSYQWFLDEGLREVFDDISPIADF
AGHLSLEFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLCNKDKDEINEHEIFMGDL
PLMTDTGSFVINGAERVIVSQLVRSPGIYYGIGHDKIGTELYSCTVIPNRGAWLEYETDS
NDIFYVRVDRTRKVPVTVLIRALGYGTNAEIIDLFGDELKLEKSFEKDTSDNYQDGLLEL
YKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKLHFKNRIAGHTLAEDVVD
MSTGEILAEKGTVVDKELATKIQNAAVPFVWIAGEKKNHKVLSNMMVDLAAYVSFDPAEI
GVTELVFYPVLENILAENDGKGEDELKEAIRKNIHELIPKHITKEDIIASINYNMHLEGG
IGTPDDIDHLGNRRIRAVGELLQNQYRIGLSRMERVVRERMTTQDMENISPQSLINIKPV
TAAVKEFFGSSQLSQFMDQNNPLSELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRM
CPIETPEGPNIGLINSLATYARVNQYGFVEAPYRVVDKTDPSNPVVTDEVVYLTADEEDN
FVVAQANEPLDEEGHFVHNNVSGRFREETSEFQKRRIDLMDVSPKMVFSVATSMIPFLQN
DDANRALMGSNMQRQAVPLLTTEAPAVGTGIEGKAAVDSGVCVLAKNAGVVERSASNEII
VKRDSDGQKDVYRLTKFTRSNQSNCYNQKPIVYKGDHVEAGEVIADGASTCNGEIALGKN
PLIGFMTWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGE
DALKDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLK
VPHGAYGIIVDAKVFTRENGDELSPGVNETVRIYIAQKRKISVGDKMAGRHGNKGVVSRV
LPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNVSTPIFDGANEN
DIADTLEMANDYVNTSWEEFEAKYKDKVDEGVMEYLGSHLEHRKLWKGVPISRDGKVRLR
DGRTGEFFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGENIPEPGVPESFKVLLKELQSL
GLDVRVLREDGSEVELSENIDYGDTDIRSILEGDSKSYSQNESFESMGFQRQEFKEDGEL
ASVESDSYTDDYTDDYVNDQDDSYSDDEE
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaagcagaatgcgtccggccaaagccggtaaaggtatcagaatgagcttctct
aggcagaaggaagttctggaaatgccaaacttaattgaaattcagaaaaactcttaccag
tggttccttgacgagggcttacgggaagtgtttgatgatatttccccgatcgctgacttt
gcgggccatttaagtctggaatttgtagattttacgctttgtaaagatgatattaaatat
acaatcgaagaatgcaaggaacgcgacgcgacttacgcagcgcctttaaaggtgaaggta
aggctttgcaacaaggacaaggacgagattaacgaacatgagattttcatgggtgatctg
ccgcttatgacggataccggctccttcgtgatcaacggagcagagcgtgttatcgtcagc
cagttagtacgttcccctggtatttattatggcattggacatgacaagatcggaaccgag
ttatacagctgcacggttatcccgaaccgcggtgcatggcttgagtacgagactgactct
aatgacattttctatgttcgtgtggacaggacaagaaaggttcctgtaacagtcctgatc
cgtgcgttaggctacggaacgaatgcggagatcatcgacctgttcggtgatgagttaaag
ctggagaagagctttgagaaggatacctccgacaactatcaggacggccttctcgaatta
tacaagaaaatccgtcccggcgagccgctctctgtggacagcgccgagagcttattaaac
agcatgttcttcgacccgagaagatatgacctggcaaaggtgggacgttataaatttaat
aagaagctccatttcaagaaccgtatcgccggacacacactggctgaggatgtggtcgac
atgtccacaggcgagattctggcagagaagggaacggttgtagacaaggagctggcaaca
aagatccagaacgcggcagtgccgtttgtatggattgccggagagaagaagaatcacaag
gttctctccaacatgatggtggatctggctgcctatgtttccttcgaccctgcggagatc
ggtgtgacagagttagtattctaccctgtactcgagaatatcctggcagaaaatgacgga
aagggcgaggatgagttaaaggaagccatcagaaagaatatccacgagctgattccgaag
catatcacaaaggaagacatcatcgcttccatcaactacaatatgcacctggaaggcgga
atcggaacgccggacgacatcgatcacctgggcaacagacgtatccgcgctgtgggagag
cttttacagaaccagtaccgcatcggtctttccagaatggagagagtagtccgcgagagg
atgacgacacaggatatggagaatatttctcctcagtccttaatcaatatcaagcctgtg
acagcggctgtgaaggagttcttcggaagctcccagctgtcccagttcatggatcagaac
aacccgctgtccgagcttacacataagagacgtctttccgccctgggacctggcggtctt
tccagagaccgtgccggattcgaggtgcgagacgttcactatacacactatggacgtatg
tgccctatcgagacacctgagggaccgaacatcggtcttatcaactctctggctacctat
gcgagagtaaaccagtacggtttcgtggaggcgccttaccgcgtggtagacaagacagat
ccgtctaacccggtggtaacagacgaggtagtttacctgacagctgacgaggaggataac
ttcgtggttgctcaggcgaacgagccgttggacgaggaaggacacttcgttcacaacaac
gtatcaggacgtttccgcgaggagacttccgagttccagaagagaagaatcgacctgatg
gacgtttctccgaagatggtattctccgtggcgacctccatgattccgttccttcagaac
gacgacgcaaaccgcgccctgatgggttccaacatgcagcgtcaggccgttccgcttctg
accacagaggctccggctgtaggtacaggtatcgagggcaaggctgccgttgactccggt
gtctgcgtgctggcaaagaatgcaggtgtggtagagcgctccgcttccaatgagatcatc
gtaaagcgcgactctgacggacagaaggacgtataccgcctgacgaaatttacacgaagc
aaccagtccaactgctacaaccagaagcctatcgtctacaagggagaccatgtggaggcc
ggcgaggttatcgcagacggagcttccacctgcaacggagagattgccctcggaaagaac
ccgcttatcggcttcatgacctgggagggctacaactacgaggacgccgttctcctgagc
gagcgtcttgttcaggaggatgtatatacctccgttcacattgaggagtacgaggcagag
gcccgcgacacgaaattagggccggaggagatcacaagggatgtgccgggtgtcggcgag
gatgccctgaaggatctggatgagagaggaatcatccgcatcggagccgaggttcgtgcc
ggagacattctggtaggaaaggttactccgaagggagagactgagctgactgctgaggag
aggcttctgcgcgccatcttcggtgagaaggcaagagaggtccgcgacacctccctcaag
gttcctcacggagcctacggaattattgtggacgccaaggtgttcacaagggagaacggc
gacgagttaagcccgggtgtaaacgagaccgtccgcatttacattgcccagaagagaaaa
atttctgtgggcgacaagatggccggacgtcacggaaacaagggtgtggtttcccgcgtg
cttcctgttgaggatatgccgttcctgccgaacggacgtccgctggatatcgtgctgaac
ccgctgggcgtgccgtcacgtatgaatatcggacaggttcttgagattcacttaagcctt
gcagccaaggctctgggcttcaatgtatccacaccgatcttcgacggtgcaaacgagaac
gatattgcagacaccctggagatggcaaacgattatgtaaacacctcctgggaagagttt
gaggcaaaatataaagacaaggtggatgaaggggtaatggaatacctgggaagtcacctg
gagcacagaaagctctggaagggtgttcccatcagccgcgacggaaaagtgcgcctgaga
gacggacgtaccggcgagttcttcgacagcccggttaccatcggacacatgcattacctg
aagctccaccacctggtagacgataagatccatgcccgttccaccggaccatactccctg
gttacacagcagcctctgggaggaaaggcacagttcggcggacagcgtttcggagagatg
gaggtttgggctctggaggcctacggtgcatcctacaccttacaggagatccttaccgtt
aagtccgatgatgtggtaggacgtgtgaagacctacgaggccatcatcaagggtgaaaac
atccctgagccgggcgtaccggagtccttcaaggtactcttaaaggagcttcagtcctta
ggtctggacgtgagggtactgcgggaggacggctccgaggtagagctgagcgagaatatc
gactacggcgacaccgacatccgctcgattctggaaggcgacagcaagagctactcacag
aacgaatccttcgagagcatgggctttcagcgtcaggaattcaaggaggacggagagctg
gcctctgtagaatctgacagttatacagacgactacacggatgactatgtgaacgatcag
gatgattcatattctgacgatgaagaataa
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integrated database retrieval system
