Cetobacterium somerae: MKD34_06495
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Entry
MKD34_06495 CDS
T08261
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csom
Cetobacterium somerae
Pathway
csom03410
Base excision repair
csom03430
Mismatch repair
csom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MKD34_06495 (recJ)
03430 Mismatch repair
MKD34_06495 (recJ)
03440 Homologous recombination
MKD34_06495 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csom03400
]
MKD34_06495 (recJ)
DNA repair and recombination proteins [BR:
csom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MKD34_06495 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MKD34_06495 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MKD34_06495 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UPO96812
LinkDB
All DBs
Position
1415729..1417429
Genome browser
AA seq
566 aa
AA seq
DB search
MHWEYKAVSENLIETKASQWNVSKFLATLLLKKGFLEKDEVDNFLNPSINKFRNPFDFEM
MDSVVEKIVSAKNNKEKLFVYGDYDVDGITAAIFLVLAFREIGIDIDYYIPNRMDEGYGL
DKKTIDYIHKNSGKLVITVDTGINSYEDVEYAHTLGIEVIVTDHHKSVKDEEEDNILFIN
PKLSDNYKFKFLAGAGVALKVAQGVYSYLNEDFSKLYQFMDVIMIGTVADVVPMFDENRI
IISKGLETLKNTKIKGLVYLMKYLKLYNKDISTTDISYFVSPLINSLGRLGNSKLGADFF
MKTDDFEIYNIIEEMKKANKQRRELERMIFDEANKMIQQKDNPSDLKYIFVASERWHPGV
IGVVASRLSVKYNLPVAMISLKDGIAKASCRSIPGVNIFNILKLIENKLIRFGGHDLAAG
FIADEKNLPEIELLFQREIRVHEHNINQPKFLEIDLELPVDKINKNHINDIKKLGPFGLE
NKHPYFLDRGVKIIDTKFFGIENRHFNGFLLKNGKSYPLVAFDLSSKLHKNNKDMLYDII
YYPEKIINKGEEFYQFRLKDLKSHKI
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcactgggaatataaagcagtatctgaaaatcttattgaaactaaggctagtcaatgg
aatgtttctaaatttttagctactttacttttaaaaaaaggttttttagaaaaagatgaa
gtagataattttcttaatccatctataaataaatttagaaatccttttgatttcgaaatg
atggatagcgttgtagaaaaaatagtttcagctaaaaataataaagaaaaattatttgtt
tacggggactatgatgtcgatggaataaccgcagccatcttccttgtattagcttttaga
gagattggaattgatattgattactatattcctaatagaatggatgaaggatatggtctt
gataaaaagactatcgactatattcataaaaattctggaaaactagtaattactgtagat
acaggaattaattcctatgaggatgttgagtatgctcatacccttggaattgaagtaatt
gttactgatcatcataaaagtgtaaaagatgaagaagaggataatatcctcttcattaat
cctaaacttagtgataattataaatttaaattcttagccggggctggagtagctttaaaa
gttgctcaaggtgtttactcttacttaaatgaagatttctctaaattatatcagttcatg
gacgttattatgattggaacagttgctgatgttgttcctatgtttgacgaaaatcgaatt
attataagtaaaggtttagaaactcttaagaacactaaaattaagggtttagtttattta
atgaagtatttaaaactttataataaagatattagtacaacagatatcagttattttgtt
tctcctttaataaattctttaggaagacttggaaattctaaattaggtgctgattttttt
atgaaaacagatgattttgaaatttacaatattattgaagagatgaaaaaagccaataag
caaagaagagaacttgaaagaatgatatttgatgaagcaaataaaatgattcaacaaaaa
gataatcctagtgatttaaaatatatttttgttgcatctgagcgatggcatcctggagta
attggtgtggttgcttctagattaagtgtaaaatataatttacctgttgctatgatctct
ttaaaagatggtattgctaaagcttcatgtagaagtattcctggtgtaaatattttcaat
attttaaagcttattgaaaataaattaatacgttttggtggccatgatttggctgctgga
tttatagctgatgaaaaaaatcttcctgaaatagaacttctatttcaaagagaaattaga
gttcatgagcataacataaatcagcctaaatttttagaaatcgatctggaattacctgtc
gacaaaataaataaaaatcatattaatgatattaaaaaattaggtccttttggccttgaa
aacaaacatccctattttcttgatagaggagttaaaattatagatacaaaattttttggc
attgaaaatagacattttaatggatttttattaaaaaatggaaaatcttatcctcttgta
gcttttgatttaagttcaaagttacacaaaaataataaggatatgctttatgatataata
tactatcctgaaaaaattattaataaaggggaagaattttatcaatttcgtttaaaagat
cttaaatctcataagatttga
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