Cetobacterium somerae: MKD34_08525
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Entry
MKD34_08525 CDS
T08261
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
csom
Cetobacterium somerae
Pathway
csom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MKD34_08525 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csom03021
]
MKD34_08525 (rpoB)
03400 DNA repair and recombination proteins [BR:
csom03400
]
MKD34_08525 (rpoB)
Enzymes [BR:
csom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MKD34_08525 (rpoB)
Transcription machinery [BR:
csom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MKD34_08525 (rpoB)
DNA repair and recombination proteins [BR:
csom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MKD34_08525 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Fimbrial_CS1
Motif
Other DBs
NCBI-ProteinID:
UPO97173
LinkDB
All DBs
Position
complement(1812288..1815785)
Genome browser
AA seq
1165 aa
AA seq
DB search
MGKLVERLNFGRIEERGTMPHFLEFQLDSYEDFLQAKEAPLNRKDKGLESAFREIFPVES
SNGDIKLEYVSYELHEAEAPLNDELECKKRGKTYSASLKVRLRLTNKKSGNEIQETLVYF
GEVPLMTERGTFIINGAERVVVSQLHRSPGVSFNKEVNIQTGKDLFSGKIIPYKGTWLEF
ETDKNDFLSVKIDRKKKVLATVFLKAVDFFDTNEEIMDEFLDEKEINLSEYYSRYSNKEE
LISVLKTKIEGSFVKEDIFNEETGEILFETKQLITEAVIFDLVDLKIENILVWEVKPEDK
VFANTIVNDTGDTKEEAVTEVFKKLRPGDLVTIDSARSLIKQMFFNPQRYDLEPVGRYKM
NKRLKLNLPEDEILLTKEDVIATIKYVISLNNGKGHTDDIDNLSNRRVRGVGELLLMQIK
AGLSKMGKMVKEKMTIQDVETLTPQSLLNTRPLNALVLDFFGSGQLSQFMDQSNPLAELT
HKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLAIYAKVNSYG
FIETPYVKVENGVANFDDIHYLAADEEEGLFIAQADTKLGENGELLGDVVCRYGHEIVNI
SGEKVHYLDVSPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRTEAPFIGTGLE
RKVAVDSGAVISAKAKGKVIYVDAKEIIIEDAEGKSYRHRLLNFERSNQAMCLHQTPLVD
LGQEVELGQVIADGPATKGGDLALGRNILMAFMPWEGYNYEDAILISDRLRKDDVFTSIH
IEEYEIEARNTKLGDEEITREIPNVSEEALKNLDSRGIIVVGSEVGPGDILVGKTAPKGE
SEPPAEEKLLRAIFGEKARDVRDTSLKMPHGSKGTVVEVLELSRENGDELKAGVNRSIRV
FIAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLADGTHLDVVINPLGVPSRMNIGQV
LEVHLGMAMGKLNGGTYLSTPVFDGATEEQVKDYLEKAGYPRKGKVTLFDGRTGDKFDNP
VTVGRMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAS
NILQEMLTVKSDDVTGRTKTYEAIVKGEEMPEADLPESFKVLLKEFQALALDVELFDSDN
ELINVNEELGKDETIVEFSLSDQIN
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggggaaactcgttgaaagattgaattttggaagaatcgaagaaagaggaactatgcct
cattttttagaattccaactggattcctatgaagattttctacaagctaaggaggctcca
cttaacagaaaagataaggggcttgaatctgcttttagagaaatattccctgttgaatct
tcaaatggagatataaaattagagtatgtttcttatgagttacatgaagcggaagctcca
ttgaatgatgagcttgagtgtaagaagagagggaagacttattctgcatctttaaaagta
agattaagacttactaataagaaaagtggaaacgaaatccaagaaacacttgtttatttt
ggagaagttcctttaatgactgaaagaggaacatttataataaatggtgctgagagagtt
gtagtatcacagttacatagatctcctggagtgtcatttaataaagaagttaatatccaa
acaggtaaagacctgttctctggaaaaattattccttataaaggaacatggttagagttt
gaaactgataaaaatgacttcttaagtgtaaaaattgatagaaagaaaaaagttttagca
actgtatttttaaaagcagttgatttcttcgatacaaacgaagagataatggatgagttt
ttagatgaaaaagaaattaatttatctgaatactattcaagatattcaaataaagaggaa
ctaattagtgttcttaaaacaaaaattgaaggaagctttgttaaagaggatatttttaat
gaagaaactggagagattttatttgaaactaaacaactaattacagaagctgtaatattt
gatttagtagacctaaaaatagaaaatattttagtttgggaagtaaaaccagaagataaa
gtatttgcaaatacaatagtaaatgatactggagatacaaaagaggaagctgtaacagag
gtatttaagaaattaagacctggagacttagtaactattgattcagctagatctttaata
aagcagatgttctttaatcctcaaagatatgatttagagcctgttggaagatataaaatg
aataaaagattaaaattaaatcttccagaagatgaaattttacttactaaagaggatgta
attgcaacaataaagtatgtaattagtttaaacaacggaaaaggacatacagatgacatt
gataacctatctaacagaagagttagaggtgttggagagttattattaatgcaaattaaa
gcaggactttctaagatgggtaaaatggtaaaagagaagatgacaattcaagatgttgaa
acattaactccacaatcattattaaacactagaccgttaaatgctttagtattagacttc
tttggatcagggcaattatcacaattcatggaccagtcaaatccacttgctgaattaact
cataagagaagaatatcagcactaggacctggaggactttcaagagaaagagcaggattc
gaggttagagacgttcacgactctcactatggaagaatttgtcctatagaaactccagag
ggaccaaacattggacttatcggatctttagctatatatgctaaagtaaattcatatgga
tttatagaaactccatatgttaaggtagaaaatggagttgctaattttgatgatattcat
tatttagcagcagatgaagaagaaggattattcatagcccaagcggatactaaacttggt
gaaaatggagaacttttaggagatgttgtatgtagatatggacatgaaatagtaaatatt
tcaggagaaaaagttcattatttagatgtatcacctaaacaggttgtatcagtttcagca
ggattaataccattccttgagcatgatgacgccaacagagcacttatgggatcgaacatg
caaagacaagcggtaccattattaagaacagaagctccattcattggaacaggacttgaa
agaaaagttgcagttgattcaggagcagtaatctcagctaaagcaaaaggtaaagttata
tacgtagatgcaaaagagattattatagaagatgcagaaggaaaatcttacagacataga
ttattaaactttgaaagatcaaaccaagcaatgtgtttacatcaaacaccattagttgac
ctaggacaagaagtagaattaggacaagtaattgctgatggacctgcaacaaaaggtgga
gatttagctctaggaagaaatattctaatggcatttatgccttgggaaggatataactac
gaggatgcgattctgatatctgatagattaagaaaagatgacgtatttacatctatccat
atagaagaatatgaaatagaagctagaaatactaaattaggtgacgaagagattacaaga
gaaataccaaatgtttctgaagaagcattaaagaacttagattcaagaggtataattgta
gtaggatcagaggttggaccaggagatatcctagtaggaaaaacagcacctaaaggtgaa
tcagagccaccagcagaagagaagttattaagagctatcttcggagaaaaagcaagagat
gtaagagatacatcattaaaaatgcctcatggatcgaaaggaacggttgttgaagttctt
gaattatcaagagaaaatggagacgagttaaaagctggagtaaatagatctataagagta
tttattgctgaaaaaagaaaaataactgttggagataaaatgtcaggaagacacggtaat
aaaggtgttgtttctagagtattaccagcagaagatatgccattcttagcagatggtaca
cacttagacgttgtaatcaatccacttggagttccttcacgtatgaacatcggacaggtt
ctagaggttcacttaggaatggcaatgggtaaattaaatggtggaacttatttatcaact
ccagtatttgatggtgcaacagaagaacaagtaaaagattatttagaaaaagctggatat
ccaagaaaaggtaaagttactttatttgatggaagaactggagataaatttgataatcca
gtaacagttggaagaatgtatatgttaaagcttcatcaccttgttgaagataagatgcac
gcaagagcaattggtccttactcactagtaactcagcaacctcttggaggaaaagcacag
ttcggaggacaaagacttggagagatggaggtttgggctttagaggcttatggagcttca
aatatccttcaagaaatgttaacagttaagtctgacgatgtaacaggtagaacaaaaact
tatgaagcaattgtaaaaggtgaagaaatgccagaggcagatttaccagagtcatttaag
gttttattaaaagagttccaagcactagcattagatgtagaactttttgattctgacaat
gagttaattaacgttaacgaagagttaggaaaagacgaaacaatcgttgagttttcttta
tctgaccaaataaactaa
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