Crateriforma spongiae: ACLV6H_25220
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Entry
ACLV6H_25220 CDS
T11503
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cspn Crateriforma spongiae
Pathway
cspn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cspn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACLV6H_25220 (rpoB)
Enzymes [BR:
cspn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACLV6H_25220 (rpoB)
Transcription machinery [BR:
cspn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACLV6H_25220 (rpoB)
DNA repair and recombination proteins [BR:
cspn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACLV6H_25220 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XNP81076
LinkDB
All DBs
Position
complement(6728762..6732481)
Genome browser
AA seq
1239 aa
AA seq
DB search
MATTSKRRLEPTEIRRFGTGLGSFELPDLTALQTASYADFLQEEVEPQKRKDFGLESVLR
EIFPIESYDGNTTLEYLYYELGKPRYTSQECRQLRLTYGRPLRIWLRLNREEPHEEEVYL
GDLPIMMGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTTTDRKLPSCRVIPERGSWIEV
NVTKKDSLTVRIDQSGKFAATTLLRAMDPRLSTDADLLNAFYETYTEKLDSSSAEKIEGR
IAVDDIVYPRGHERAGEIFVEAGHRISKDVAEKIVTAEVKSVELMNAPKVPLIFNTLGED
NTASHEEALLRIYQRLRPGNPPQLEKAKTLFDEKFYDSNRYRLGKVGRFRLNRKLDLGVA
ESEMTLRPDDMIAAIRYLIDLFDPDTGAEIDDIDHLGNRRLRTIDELACEELRKGFLKLR
RTVQERMSVKDAQDMTPRSLINPKSVSAAIDYFFGRGELSQVVDQTNPLSQLTHERRLSA
LGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIFAGVDDYGFLVTPYR
KVAEGKVTDDVVWLRADEESESYVAPADTEVKDGALVPGPNMIARFRSDFEIVQPTQVHY
MDVAPAQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVAEPPIVGTGMEREVAKNS
SMVIRARRAGKVTRADATRIEIGSDHYELKKYQGLNERTCQNQKPLVTVGDKVEKGQIIA
DGAATRNGELALGRNVLVGFMSFEGFNYEDAIIISEELVRNDTYTSIHIEDFDVEIRETK
LGREEFTRDIPNVSEKALAALDESGIVQVGTYVKPGDILVGKVSPKSKTELTPEEKLLHA
IFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLSDEERKAFERELKETETTGNAEIA
STFESFVRDLEEAAGKKLKDTTGTPLADGQDPKFVAERANVFRIDHVMDQVEDEEKKQAV
HQVYKNQWGNVENALDNRDRKLNSMKRGDELRSGVLQMVKVYIATKRCISVGDKMAGRHG
NKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAKMGFQAITP
VFDGASEEDINKVLADAELPAHGKVRLRDGRTGEPMEQETTVGYIYMLKLHHLVDDKVHA
RSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIY
ESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLEKRPI
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaccagcaagcgacgcctggaaccgaccgaaatccgcaggtttggcaccggc
cttggaagcttcgaactgccagatttgacggcccttcaaaccgcctcgtatgcggatttc
ttgcaggaggaagtggagccgcagaagcgaaaggattttggtctggaaagtgtgcttcgc
gaaatctttccgatcgaaagctacgacggaaacacgacgctggagtacctgtactacgaa
ctgggcaagccccgctacaccagtcaggaatgtcgccagttgcgactgacctacggccgg
ccgctgcggatttggctgcggctgaatcgtgaggaaccgcacgaggaagaggtctacctg
ggcgacctgccgatcatgatgggtggcggtgaattcattatcaacggtgccgagcgagtc
gtcgtcagccagttgcaccgcagccccggtgtcgactttgtcttggaacaagacacgacg
accgaccgcaagttgcccagttgccgcgtgatccccgagcgtggttcgtggatcgaagtc
aacgtgaccaagaaggattcgttgaccgtccggatcgaccagagcggtaagttcgcggcg
accacgttgctgcgtgcgatggacccgcgtttgtcgaccgacgcagacctgctgaacgcg
ttctacgaaacctacactgagaagctggacagcagttcggccgaaaagatcgagggccgc
atcgccgtcgacgacatcgtgtacccccgtggtcacgaacgtgccggtgaaatctttgtc
gaagccggtcaccggatcagcaaggacgttgccgaaaagatcgtcaccgcggaggtgaag
tcggtcgaattgatgaatgcccccaaggtgccgttgatcttcaacaccttgggtgaagac
aacaccgccagccacgaagaagcgttgctgcggatctaccagcgtctgcgtccggggaac
ccgccgcaactggaaaaggccaagacgctgttcgatgaaaagttctacgacagcaaccgt
tatcgcttgggcaaggtcggtcgattccgcttgaatcgcaagctggatttgggcgtcgcc
gagtcggaaatgacgctgcgtccggacgacatgatcgccgcgattcgctacctgatcgac
ttgttcgatccggacaccggtgcggagatcgatgacattgaccacttgggcaaccgtcgt
ctgcgaacgatcgacgaattggcctgcgaagaactgcgcaagggcttcctgaagctgcgc
cggaccgtccaggaacggatgagcgtcaaggatgcccaggacatgaccccgcgttcgctg
atcaatccgaagagcgtttcggcggcgatcgattacttcttcggtcgtggcgaactttcc
caggtcgtcgaccagaccaacccgttgtcacagctgactcacgaacgacgtttgtcggcg
ttgggtccgggcgggttgaaccggaaacgtgcgggcttcgaagtccgggatgtccacatt
tctcactacggtcgaatctgtccgattgaaacgccggaaggcacgaacatcggtctgatc
agttcgttggcgatcttcgccggcgtcgatgattacggtttcttggtcacgccctatcgc
aaggtcgccgaagggaaggtcaccgacgacgtcgtttggctgcgtgccgacgaagaaagc
gagtcttacgtcgctccggctgataccgaggtcaaggacggcgcgttggtgccggggccg
aacatgatcgcccgcttccgcagcgactttgaaatcgtgcagccgactcaggtccactac
atggacgtcgcgccggcccagatggtcggtgtttcggccggtctgattcctttcctggaa
cacgacgacgcgaaccgcgcgttgatggggtcgaacatgcagcggcaagccgtgccgctg
ttggtcgccgaacccccgatcgtcggaaccgggatggagcgagaagtcgccaagaacagt
tcgatggtcatccgtgctcggcgagccgggaaggtgacccgcgccgatgcgacccgaatc
gaaatcggcagcgaccactacgagctgaagaaataccagggtctgaacgagcggacctgc
caaaaccagaagccgctggtcacggtcggtgacaaggtcgaaaagggccaaatcattgcc
gacggtgccgccacgcggaacggcgaattggcgcttggccgaaacgtcttggtcgggttc
atgtctttcgaaggcttcaattacgaagacgcgatcatcatcagcgaagaattggttcgc
aacgacacgtacacgtcgatccacatcgaagacttcgacgtggaaattcgcgaaaccaag
ctgggtcgcgaagaattcactcgcgatattcccaacgtttccgaaaaagcgttggccgct
ttggacgaaagtggcatcgttcaggtcggaacctatgtgaagccgggtgacatcctggtc
ggcaaggtttcgccgaagtcgaagacggaattgacgccggaagaaaaactgttgcacgcg
atctttggtcgtgccggtgaagacgtgaagaacgattcgctggaagtcccctcggggatc
gaagggatcgtcatcgacacccagaagttctcgcgtcgaatgagtctgtcggacgaagaa
cgcaaggcgttcgagcgtgagctgaaggagaccgaaacgacgggcaacgcggaaatcgcc
agcaccttcgaatcgttcgttcgcgaccttgaagaagcggccggcaaaaagctgaaggac
accaccgggaccccgctggccgacggccaagatcccaagttcgtcgccgaacgggccaac
gtgttccgcatcgaccacgtcatggaccaagtcgaagacgaggaaaagaagcaagccgtc
caccaggtttacaaaaaccagtgggggaacgtcgaaaacgcgctggataaccgcgaccgc
aagctgaacagcatgaagcggggggatgaacttcgcagcggcgtgttgcaaatggtcaag
gtttacatcgcgaccaagcgttgcatcagcgtcggcgacaagatggccggtcgtcacggg
aacaagggtgtgatcgccaaaatcttgccgatcgaagacatgcccttcctgcccgacggc
acgccgatccaaatcatgttgaacccgctgggcgttcccagccggatgaacgtgggtcag
attttggaaacccacttgggctgggccggtgccaagatgggcttccaagcgatcacgccg
gtgttcgacggtgccagcgaagaagacatcaacaaggtgttggccgacgccgaattgccc
gctcacggtaaggttcgactgcgtgacggtcgcaccggtgaaccgatggagcaggaaacc
acggtgggttacatctacatgttgaagctgcaccacttggtcgacgacaaggttcacgca
cgttccacgggcccgtattcgttgatcacccagcaaccgctgggcggcaaggctcgcttc
ggcggccaacgtttcggggaaatggaagtctgggcactggaagcttacggtgccgcttac
atcctgcaggaactgttgacggtgaagtccgacgacgtcgaaggtcgtacgaagatctac
gaatcgatggtcaagggcgaaaacacgttggaagccggcacgcccgccagctttgacgtg
ttgaccaatgaaatccgcggcctggcgttgaacatgcagctggagaaacgcccgatctga
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