Clostridium saccharoperbutylacetonicum: Cspa_c13550
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Entry
Cspa_c13550 CDS
T02467
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
csr
Clostridium saccharoperbutylacetonicum
Pathway
csr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cspa_c13550 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csr03019
]
Cspa_c13550 (rny)
Messenger RNA biogenesis [BR:
csr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cspa_c13550 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_KhpA-B
KH_NusA_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
AGF55127
UniProt:
M1MUA3
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All DBs
Position
1488407..1489948
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AA seq
513 aa
AA seq
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MEIAGMILIDIVVLLVLGIVVYKTIQNTSKAKIESLEKEAKEVLDKAKKEAESTKKESIL
EAKEELHRLRNDFDKESRDRRNEIQRLERRVIQREEALDKKSELLEKKDETINERMLELD
QVEAQVQKLYDERRVELERVAALSTEEARGILLDEIRKEITHDAALMIKDIESKAKEEAE
KRAREIITTAIQRCAADHVSESTVHVVALPNDEMKGRIIGREGRNIRTLETLTGVDLIID
DTPEAVILSSFDPIRREVARMALEKLIVDGRIHPARIEEMVERATRDVENSIKEEGEQAA
LETSVHGLHPEIIRLLGRLKYRTSYGQNVLKHSIEVSYLAGLMASELGLDVTLAKRAGLL
HDIGKAVDQEQEGPHALIGGDLAKKYHESPLVINAIAAHHSDVEMQSLEAVLVQAADAIS
AARPGARRETLEAYIKRLEKLEEIANSHEGVEKSYAIQAGREIRIMVKPDKVDDAGTVEL
ARSLVKSVEEELEYPGQIKINVIRETRAVDFAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
gtggaaatagctggaatgatattaatagatattgttgttctattagtattgggaatagtg
gtttataaaacgattcaaaatacgtcaaaagcgaagattgaatcgcttgaaaaagaagca
aaggaagttttagataaagctaaaaaggaagcagaatcaactaaaaaagagtctatcctt
gaagcaaaagaagaacttcatagattaagaaatgattttgataaggagtctcgtgacaga
agaaatgagattcaaaggcttgaaagaagagtaattcaaagagaggaagctcttgataaa
aagagtgaacttcttgaaaagaaggacgaaacaatcaatgaaagaatgcttgagttagat
caagtagaagcacaggtacagaagctttatgatgaaagaagagtggaacttgaaagagta
gctgcactttcaacagaagaagcaagagggattcttttagatgagattaggaaagaaatc
acacatgatgctgccttaatgataaaagatattgaaagtaaggcaaaagaagaagcagag
aagagggcgcgtgaaataataacaactgcgatccaaagatgtgctgctgatcatgtgtca
gaatcaactgtacacgttgttgcactaccgaatgatgagatgaaaggtagaataataggt
agagaaggaagaaacattagaaccttggaaacattaacaggagtagatttaattattgat
gatactccagaagcagtcattctttctagctttgatccaattaggcgtgaagttgcaaga
atggcactagaaaagttaatagtggatggcagaatacatccagcaagaatcgaagagatg
gttgaaagagcaactagagacgtagaaaatagtataaaagaagaaggagagcaagcagct
cttgaaactagtgtacatggactacatccagaaattattagacttcttggtagattaaag
tatagaacaagttatgggcaaaatgttttaaaacattccatagaagtttcatacttagct
ggcttaatggcttcagagctaggtttagatgttactttagctaaaagagctggattacta
catgatattggtaaagctgttgaccaagagcaagagggacctcatgctttaattggtgga
gatttagctaaaaagtatcatgaatcaccattagtaattaatgcaatagcagcacatcat
tcagatgtagaaatgcaatctttagaagctgtactagttcaagcagcagatgcaatatca
gcagctagaccaggagctagaagagagacattagaagcatacattaagagattggaaaag
ttagaagaaattgcaaattcacatgaaggtgtagaaaagtcatatgccattcaagctggt
agagagattagaattatggttaaaccagataaagtagacgatgctggaacagttgaattg
gcacgtagtttagtaaagagtgtcgaggaagaacttgaatatccaggtcaaattaaaatt
aatgttataagagaaactagagcagtagattttgccaagtaa
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