Clostridium saccharoperbutylacetonicum: Cspa_c30470
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Entry
Cspa_c30470 CDS
T02467
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csr
Clostridium saccharoperbutylacetonicum
Pathway
csr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cspa_c30470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csr03019
]
Cspa_c30470
03009 Ribosome biogenesis [BR:
csr03009
]
Cspa_c30470
Enzymes [BR:
csr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cspa_c30470
Messenger RNA biogenesis [BR:
csr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cspa_c30470
Ribosome biogenesis [BR:
csr03009
]
Prokaryotic type
rRNA helicases
Cspa_c30470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SWI2_SNF2
Cas3-like_C_2
AAA_19
nSTAND_NTPase5
OST48_N
UvrD-helicase
Surface-like_ins_dom
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGF56808
UniProt:
M1MKL0
LinkDB
All DBs
Position
complement(3327910..3329019)
Genome browser
AA seq
369 aa
AA seq
DB search
MNFKQLNISPELISILTRSGINVPTPIQEKSISPIKDGKDIIAEAATGTGKTLAFLLPLI
ENINSKSNDIQVLILTPTRELAIQITNEANKLKDAKEINILAAYGGKDISSQLKKLNNNI
HLIIATPGRLLDHINRKSIDLSKLKTFVLDEADQMLFMGFKNEVEKILASMPKKKQMLCF
SATMDSAVKKLAYRYMKDPIEISIEKEEITLDSIKQEVVETTDRNKRDALCKVLDEDNPF
MAIIFCRTKRRVDELETVLHTRNYNCLKLHSDIPQNKRERIMKSFRNADIQFLIATDVAA
RGLDITGVTHIYNYDIPETVESYIHRIGRTGRAGETGYTCLFIDPKNLRALKEIEETIGF
EITRRDVIL
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaacaacttaatatcagtcctgaattaattagtattttaactagatctgga
attaatgttcctactcctatccaagaaaaatctatatcacctataaaagatggaaaagat
ataatagcagaagctgcaactggaacaggtaaaactttagcttttttattaccattaatt
gaaaacataaattcaaaatcaaatgatatacaagtgttaatcttaactccaacaagagaa
ctagctattcaaattactaatgaagcgaataagttaaaagatgctaaagaaataaatata
ttagcggcttatggaggaaaagacatttcctctcaactaaaaaaattgaataataatatt
catttgattattgcaactcctggaagacttttagatcatattaatcgcaaaagtattgat
ttaagtaaattaaaaacctttgttttagatgaagctgatcaaatgttatttatgggcttt
aaaaatgaagttgaaaaaattttggcttcaatgccaaagaagaaacaaatgctttgtttc
tcagcgacaatggattcggcagtaaaaaaattagcttatagatatatgaaagacccaatt
gaaatttctatagaaaaagaagaaattactttagattcaattaaacaagaagttgttgag
acaactgatagaaataaacgtgatgccttatgtaaagtattggatgaagataaccctttt
atggcaattatattttgtaggacaaagcgaagagtcgatgaattagagactgtactacat
actcgtaattacaattgcttaaagttacatagtgacattcctcaaaataaaagagaaaga
ataatgaaatcttttagaaatgctgatatacagtttttaattgcaactgatgttgcagca
agaggcttagatattactggagtaactcatatatataattatgatatcccagaaactgta
gaaagctatattcatcgtataggaagaactggtagagctggagaaaccggctatacttgt
ctgtttatagatccaaagaatctcagagctcttaaagaaattgaagaaactattggtttt
gaaattactagacgagatgtgattttatag
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