Clostridium saccharoperbutylacetonicum: Cspa_c46020
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Entry
Cspa_c46020 CDS
T02467
Symbol
recJ2
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csr
Clostridium saccharoperbutylacetonicum
Pathway
csr03410
Base excision repair
csr03430
Mismatch repair
csr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cspa_c46020 (recJ2)
03430 Mismatch repair
Cspa_c46020 (recJ2)
03440 Homologous recombination
Cspa_c46020 (recJ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csr03400
]
Cspa_c46020 (recJ2)
DNA repair and recombination proteins [BR:
csr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cspa_c46020 (recJ2)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cspa_c46020 (recJ2)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cspa_c46020 (recJ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ADH_zinc_N
Motif
Other DBs
NCBI-ProteinID:
AGF58355
UniProt:
M1LYK5
LinkDB
All DBs
Position
complement(5013909..5015675)
Genome browser
AA seq
588 aa
AA seq
DB search
MAERWFVKNIKANYKQIAQKYGITEFMSKLIINRDITNDEVIRSYVNPSLERLRNASDMK
DLDKAVNILKEKIQLNKKIRIVGDYDVDGVISIYILYTALVKCNAKVDYEIPDRIKDGYG
INKDIIQQAKEDGVDTILTCDNGISAIEAIKYAKDLGMTVIVTDHHDIPFVEDENNNRKF
ISSEADAIVNPKQEDCRYKFKQLCGAGVAFKLIQVLYEKFNIDKEEAFKLVEFLAIATVC
DVVDLVDENRIFVKKGLELINNTSNLGLMELLRECELNEKKLSVYHLGFIIGPCINASGR
LDTAKVGLQLLLSKEEEEAVTLAKGLVRLNEERKEMTMKGVETAIEIVEMNGMINDKVLV
IYIPDVHESLAGIIAGRIREKYNAPTLVITKSEKGVKGSGRSIEEYNMYEELIKCKDLLQ
NFGGHPMAAGFSLQEENIDEFRRRLNRNTDLKDEDLLRKVTIDCALPLDSISYDLINDIE
RLEPFGKANSKPLFAEKNVNLIKAVVLGKNRNVLKLKVKTKLNKVIDAIYFGDIYEFEEE
VSNKYGKEELLKLYDGVYNGIMMDLVFYPNVNEYNGNTSIQIVVQNYR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagatggtttgtaaaaaatataaaagctaattataagcaaatagcacaaaaa
tatggaattacagaatttatgagcaagcttattattaatagggatattacaaatgatgaa
gttataagaagctatgtaaatccaagtcttgaaagacttagaaatgcaagtgatatgaaa
gatttagataaagctgtaaatatccttaaagaaaaaatacaattaaataaaaaaatacga
attgttggagattatgatgtagatggagttataagtatttacattttatatactgcatta
gttaaatgcaatgcaaaggtagattatgaaattccagatagaattaaagatggttatggt
ataaataaagatataatacaacaagctaaggaagatggagttgatacaatcttaacttgt
gacaatggaatatcagcgatagaagcaattaaatatgcaaaagatttgggaatgactgtt
attgtaacagatcatcatgatattccgtttgtagaagatgaaaataacaatagaaaattc
ataagttcagaagcagatgctatagtgaatcctaaacaagaagattgtagatataaattt
aagcaattatgtggagcaggagtagcatttaaacttattcaagtgctttatgaaaaattt
aatatagataaggaagaagcgtttaaattagtagaatttttggctattgcaacagtttgt
gatgtcgtagatttagttgatgagaatagaatttttgttaaaaaagggttagaacttata
aataatactagcaatttaggcttaatggaattgcttagagaatgtgaattaaatgaaaaa
aaattatcagtatatcatcttggatttataataggaccctgtattaatgcatcaggaagg
ttggatactgcgaaagtaggattacaattattgctttcaaaagaagaagaggaagcagtt
actttagctaaaggactagtaaggttaaatgaagaaagaaaagaaatgacaatgaaaggc
gttgaaactgcaatagaaattgttgaaatgaacgggatgattaatgacaaggtacttgtg
atttatataccagatgttcatgaaagcttagcaggtataattgcaggaaggataagggaa
aaatacaatgcgccaactttggtcatcacaaaatccgaaaaaggggtaaagggttctggt
agatccatagaggaatataatatgtatgaggaacttattaaatgcaaggatttacttcaa
aactttggagggcatcctatggctgctggattttcactgcaggaagaaaatattgatgaa
tttagaagaagattgaatagaaatactgatttaaaagatgaagatttacttagaaaggtt
accattgattgtgctttgccacttgattcaataagttatgatttgatcaatgatattgaa
agattagaaccgtttggaaaagctaattctaaaccattatttgctgaaaaaaatgtaaat
ttaataaaagcagtagtattgggtaaaaatagaaatgtgttaaagcttaaggtaaagact
aaattaaataaagtaatagatgcaatatattttggagatatttacgaatttgaagaagaa
gttagtaataagtatggcaaagaagaattgttaaaactttatgatggagtatataatggg
ataatgatggatttggttttttatccaaatgttaatgaatataatggaaatacgagtatt
caaattgtagtccaaaattacagatga
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