Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Cst_c16200
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Entry
Cst_c16200 CDS
T02440
Symbol
rnjA
Name
(GenBank) ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
css
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
css03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
css00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cst_c16200 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
css03019
]
Cst_c16200 (rnjA)
Messenger RNA biogenesis [BR:
css03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cst_c16200 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
HTH_19
Motif
Other DBs
NCBI-ProteinID:
AGC68606
UniProt:
L7VQA9
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All DBs
Position
complement(1749664..1751337)
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AA seq
557 aa
AA seq
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MANRKKNKLRVIPLGGLEEIGKNMTVFEYGESIIVVDCGVAFPEDEMLGIDLVIPDVTYL
EKNLSKVKGIIVTHGHEDHIGALPYVLNRIPVPVYGTDLTLALIENKLVEHQMLNRAELR
AVRAGQTIQLGAFKVEFIRSTHSIADSVALAIHTPVGVVLHTSDFKIDHTPIEGEPIDLA
RIAELGKKGVLLLMADSTNVERPGYTMSERTVGETLDNVFKDAKSRIIVATFASNIHRIQ
QIVNSAMKFNRKVALNGRSMINVVKTAMKLGYLNIPPDVLIDIDRIQKLPRNQIVMITTG
SQGEPMSALSRIASNSHRKVSIEKGDLVIISASPIPGNEKYISRVINDLFKQGANVIYEA
LVEVHVSGHARQEELKLIHRLVRPKFFMPVHGEYRHLKQHANLAQSLGMPEENIFIMENG
QVLELSQRKAQIAGTVQAGSILIDGLGVGDVGNIVLRDRKHLSEDGLIVVVVTVNSDGKI
LTTPEVISRGFVYVKESEELMDEIRELTLEIIQKNLGKRKSSYANIKNNVKDELSSYLYQ
KTKRKPMILPVIIEIPC
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaacagaaagaaaaacaagctaagagtaattccgttaggcggtcttgaagagata
ggtaaaaacatgacggttttcgagtatggtgaaagtatcattgttgtggactgcggagtg
gcttttcctgaagatgagatgctgggtattgatctggtgattcccgatgttacctatctt
gagaaaaatctgtcgaaggtgaaagggattatcgttacccatggccatgaagatcatata
ggagctctgccgtatgtattgaacagaattccggtgcctgtttatggaaccgatcttaca
ctggcgttgattgaaaacaaacttgtagagcaccagatgctgaacagggctgagcttagg
gcggtaagagcgggtcagaccattcagttgggagcatttaaagtggagtttatcagatca
actcacagcatagcagattcggtggcacttgcaatccacacgcctgttggtgtggtcctt
catacttccgactttaagattgatcatactcccattgaaggcgagccgatagaccttgca
cggatagctgaactgggcaaaaaaggcgttttgcttttgatggcggacagcaccaatgtt
gaacgccccggttacacaatgagtgaaagaactgtcggagaaacccttgataatgtgttt
aaggatgcgaaatccaggattatagttgccacttttgcgtcgaatatccacaggatacag
cagattgtaaattctgcgatgaagtttaaccggaaagtggcgctgaacggccgaagcatg
attaatgtagtaaaaacggcaatgaaactgggatatctgaatattcctccggatgttttg
attgatatagacaggatacagaaacttccgagaaatcagatagtgatgattacaaccggc
agtcagggcgagcctatgtcggcgctttcgagaattgcttcgaacagccaccgcaaggta
agcatagaaaaaggcgacctggttattatatcggcaagcccaatacctggaaacgagaaa
tatatctcccgtgtcataaacgatttgttcaaacagggggcaaacgttatatatgaagcc
cttgttgaggttcatgtttcgggacacgccaggcaggaggagcttaaacttattcacagg
ctggttcgtcccaaattttttatgcctgttcatggtgaatacaggcatctgaaacagcat
gcgaaccttgcccagtcccttggtatgccggaggagaatatttttattatggaaaacgga
caagtattggaattgtcccagagaaaggctcagattgccggaacggtgcaggcggggagt
attcttattgacggccttggggttggagacgtgggcaatattgttcttagagacagaaag
cacctttccgaagacggcttgattgttgtggtggttacggttaattcggatggcaaaata
ttaacaaccccagaggttatatcaagaggctttgtatatgttaaagagtcggaagaattg
atggacgaaataagagaactgacgcttgaaattatacagaaaaatcttggaaagagaaaa
agcagttatgcgaacatcaaaaacaatgtcaaggatgaactgagttcatatctttaccag
aaaaccaagagaaaacccatgattttgcctgtaattattgaaataccgtgctga
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