Collinsella stercoris: LK434_05325
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Entry
LK434_05325 CDS
T07953
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK434_05325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cstc03021
]
LK434_05325
03400 DNA repair and recombination proteins [BR:
cstc03400
]
LK434_05325
Enzymes [BR:
cstc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK434_05325
Transcription machinery [BR:
cstc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK434_05325
DNA repair and recombination proteins [BR:
cstc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK434_05325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UEA44577
LinkDB
All DBs
Position
complement(1237095..1240595)
Genome browser
AA seq
1166 aa
AA seq
DB search
MPKANATKTVTATERTRVNFGKIPETMELPNLISVQKESFERFMDEGLRDAFRESSPIQS
QNHQLEVTFGHHQFGDPSHTVDECREKDMTYQAPLLTEVRLTNKETGEIKEQLVFMGDFP
MMTDQGTFIINGTERIVVSQLVRSPGVYYSSEMDGGKQVYKAQIIPARGAWLEFEVDKRD
QLVVSIDRKRKQSATMFLRALGIAVTNDDIFELLGDSDVIKRTIERDTALTREDALIEIY
RRLRPGEPPTVDASRSLLEGLLFNPQRYDLARVGRYKVNKKLGLTTEEEVAVLTDEDIIA
TLRYLLSLAAGEPGFKIDDIDHFGNRRIRTVGELVANQFRIGMSRMERVVRERMSSQDID
EITPQSLINIRPIVASIKEFFGSSQLSQFMDQANPLTGLTHKRRLSALGPGGLAGHKSGS
SRRTNVPTAVRDVHNSHYSRMCPIETPEGPNIGLIGSLALYARVNQYGFIEAPYRKIENG
VATDQIDWMTADEEENHIIAPANTPIDPKTGELVTIDADGNLVRPHTVVARTRDFDGSFG
APADVPVEDVDYMDVSPRQMLSVAATLIPFLEHDDAKRTLMGANMQRQAVPLVHPVAPYI
GTGMESRAAIDSGEVTLAKHAGEVIFADAAKITVKTAESMDTYKLPKYQRSNQSTCINHR
PLVRVGDQVVVGQPLADGPSTDHGELALGQNLTVAYMPWEGFNYEDGIIVSERLVSEDLL
TTINISRYELDARDTKLGPEEITREIPNLSEDMLANLDEDGIIRIGAEVKAGDILVGKVS
PKGESALTAEERLLRAIFGTKAHDVRDTSLKMPHGAEGRVIDVVRFSRENGDDLAPGVNE
QVRVYVAQRRKIQQGDKIAGRHGNKGVICEVLPVEDMPYMADGTPVDVILNPLGVPSRMN
VGQLLECHLGWAAACGWDTESADSDKYVPGPFFVSTPVFDGAHEDEIAEVIRRANKNMLN
LASERFGEHMNPSFVTQLDERGKTVLYDGRSGEQFREPITVGTSYILKLGHMVDDKIHAR
STGPYSLVTQQPLGGKAQFGGQRFGEMEVWALYAYGASNVLQEILTVKSDDTIGRVKTYE
AITKGENVPMAGIPESFKVLVKEIRSLALDIEPIRDAEPEAPAAPVAADDAELDLNDLPS
LDEADTSADAADAILDELAATTTDKE
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaaagcaaacgctaccaagaccgtgaccgccaccgagcgcacacgcgtcaacttc
gggaagatcccggagacgatggagctgccgaacctcatctccgtgcagaaggagagcttc
gagcgcttcatggacgagggcctgcgcgacgcctttagggagtccagccccatccagagc
cagaaccaccagctcgaggtgacctttggccaccaccagttcggcgacccgtcccacacc
gtggacgagtgccgcgaaaaggacatgacctaccaggccccgctgctcaccgaggtccgt
ctcaccaacaaggagacgggcgagatcaaggagcagctcgtcttcatgggtgacttcccc
atgatgaccgaccagggcaccttcatcatcaacggcaccgagcgcatcgtcgtctcgcag
ctggtccgctccccgggcgtgtattacagctccgagatggacggcggcaagcaggtctac
aaggcccagatcatcccggcccgcggcgcgtggctggagttcgaggtcgacaagcgcgac
cagctcgtggtctccatcgaccgcaagcgcaagcagtccgccaccatgttcctgcgcgct
cttggcatcgccgttaccaacgacgacatcttcgagttgctcggcgactccgacgtgatc
aagcgcaccatcgagcgcgacaccgccctcacccgcgaggacgccctcatcgagatctac
cgtcgtctgcgccccggcgagccgccgaccgtcgacgcctcccgtagcctgctcgagggc
ctgctgttcaacccgcagcgctacgacctcgcccgcgtgggccgctacaaggtcaacaag
aagctcggtctcaccaccgaggaggaggtcgccgttctcaccgacgaggacatcatcgcg
accctgcgctacctgctgtccctggcggcgggcgagcccggcttcaagatcgacgacatc
gaccacttcggcaaccgccgcatccgcaccgtgggcgagctggtggccaaccagttccgc
atcggcatgagccgcatggagcgcgtcgtgcgcgagcgcatgagctcccaggacatcgac
gagatcacgccgcagagcctcatcaacatccgcccgatcgtggcctccatcaaggagttc
ttcggctccagccagctctcccagttcatggaccaggccaacccgctgaccggtctcacc
cacaagcgccgtctgtccgccctcggccccggtggcctggcgggccacaagtccggctcc
agccgccgcaccaacgtgcccacggccgtccgcgacgtccacaactcgcactactcccgt
atgtgccccatcgagacgcccgaaggccccaacatcggcctgatcggctcgctggccctc
tacgcccgcgtgaaccagtacggcttcatcgaggccccgtaccgcaagatcgagaacggc
gtggccaccgaccagatcgactggatgaccgccgatgaggaagagaaccacatcatcgcg
ccggccaacaccccgatcgaccccaagacgggcgagctcgtgaccatcgacgccgacggc
aacctggtgcgcccgcacacggtcgtcgcccgcacgcgcgacttcgacggctccttcggc
gccccggccgacgtgccggtcgaggacgtcgactacatggacgtctccccgcgccagatg
ctctccgtagccgccacgctcattccgttcctcgagcatgacgacgccaagcgtaccctc
atgggcgcgaacatgcagcgtcaggccgtgccgctggtccacccggtcgccccctacatc
ggcaccggcatggagagccgcgccgccatcgactccggcgaggtcaccctggccaagcac
gccggcgaggtcatcttcgccgacgccgccaagatcacggtcaagaccgctgagagtatg
gacacctacaagctgcccaagtaccagcgctccaaccagtccacctgcatcaaccaccgc
ccgctcgtgcgcgtgggcgaccaggtcgtggtgggccagccgctggccgacggcccctcg
accgatcacggcgagctcgcgctcggccagaacctcaccgtggcctacatgccgtgggag
ggcttcaactacgaggacggcatcatcgtctccgagcgtctcgtctccgaggacctgctg
accaccatcaacatctcccgctacgagctcgacgcccgcgacaccaagctgggccccgag
gagatcacccgcgagatcccgaacctgtccgaggacatgctcgccaacctcgacgaggac
ggcatcatccgcatcggcgccgaggtcaaggccggcgacatcctcgtgggcaaggtctct
cccaagggcgagagcgcgctcaccgctgaggagcgcctgctgcgcgccatcttcggcacc
aaggcgcacgacgtccgcgacacctccctcaagatgccccacggcgccgagggccgcgtc
atcgacgtggttcgcttcagccgcgagaacggcgacgacctcgccccgggcgtcaacgag
caggtgcgcgtctacgtcgcgcagcgccgtaagatccagcagggcgacaagatcgccggc
cgccatggcaacaagggcgttatctgcgaggtcctgcccgtggaggatatgccctacatg
gccgacggcaccccggtcgacgtcatcctgaacccgctgggcgtcccgtcccgtatgaac
gtgggccagctgctcgagtgccacctcggctgggccgccgcctgcggttgggacaccgag
tccgccgactccgacaagtacgtccccggtccgttcttcgtctccacgcccgtcttcgac
ggcgcgcacgaggacgagatcgccgaggtcatccgtcgcgccaacaagaacatgctcaac
cttgcctccgagcgctttggcgagcacatgaacccctcgttcgtgacccagctcgacgag
cgcggcaagaccgtgctgtacgacggccgttccggcgagcagttccgcgagcccatcacc
gtgggcacgtcctacatcctgaagctcggccacatggtcgacgacaagatccacgctcgc
tcgacgggcccctacagcctcgtcacccagcagccgctgggcggtaaggcccagttcggc
ggccagcgcttcggcgagatggaggtctgggcgctctacgcgtacggcgcctccaacgtg
ctccaggagatcctcacggtcaagtccgacgacaccatcggccgcgtcaagacctacgag
gccatcaccaagggcgagaacgtccccatggccggcatccccgagtccttcaaggttctc
gtcaaggagatccgctccctggcgctcgacatcgagcccatccgcgacgccgagccggaa
gcgcccgccgctcccgtggccgccgacgacgccgagctcgacctgaacgacctgccctcg
ctcgacgaggccgacacctccgccgatgcggccgacgccatcctcgatgagctcgccgcc
accaccaccgataaggagtag
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