KEGG   Cytobacillus suaedae: IM538_14000
Entry
IM538_14000       CDS       T08143                                 
Name
(GenBank) 3'-5' exoribonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
csua  Cytobacillus suaedae
Pathway
csua03030  DNA replication
csua03430  Mismatch repair
csua03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:csua00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    IM538_14000
   03430 Mismatch repair
    IM538_14000
   03440 Homologous recombination
    IM538_14000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csua03032]
    IM538_14000
   03400 DNA repair and recombination proteins [BR:csua03400]
    IM538_14000
Enzymes [BR:csua01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     IM538_14000
DNA replication proteins [BR:csua03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     IM538_14000
DNA repair and recombination proteins [BR:csua03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     IM538_14000
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2 DEDDh_C DUF533
Other DBs
NCBI-ProteinID: QOR64954
LinkDB
Position
2624794..2625498
AA seq 234 aa
MPVDFQIIEYYLYKQFIQKYKLNQAMLHPSYSSLNQALESYRQPVMDQDNFITNEFTVFD
LETTGFFPDLGDEILSIGAVKIKEGLVQFDETFYKVVKPIHTVSKATKKLTGLTTEDLKR
GTPLPDAIQEFLAFSEGSILVAHPASFDISFLRKVLHKWELPPIETVYVDSFLVANSLYP
EEKNFLDQLVRRFNIPKRLRHHALYDAIMTAEIFIQLLKDIEHEKIAQFLQSTS
NT seq 705 nt   +upstreamnt  +downstreamnt
ttgcctgtcgattttcaaattatcgaatactatttatataaacaatttatccaaaaatat
aaactgaatcaggcaatgcttcatccttcctactcaagcttaaaccaagcattagaaagc
tatcgacagccagttatggatcaagataacttcattacaaatgaatttacagtatttgac
cttgagacaacgggtttctttcctgatttaggtgatgaaatcctttcgattggtgctgta
aaaataaaggaaggtcttgttcaattcgacgaaaccttttataaagtcgtaaagcccatt
catacagtatcaaaagctacaaaaaaactgacaggtttaacaacagaagacctaaaaaga
ggtactccacttcctgatgctattcaagagtttttagcatttagtgaaggatccattcta
gtagcccatcccgcaagctttgatattagcttcttaagaaaggtactccataaatgggag
ttacctcctattgaaactgtttatgttgattctttcctagtagctaattcactttatccg
gaagaaaaaaacttccttgatcaattagtaagaagatttaatatacctaagcgacttcga
catcatgccctttacgatgcaattatgactgcagaaatttttatacaactactaaaggac
atagaacacgaaaagattgcccaatttttgcaatctacttcataa

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