Capricornis sumatraensis (Sumatran serow): 138075249
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Entry
138075249 CDS
T10522
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138075249 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csum03041
]
138075249 (SF3B1)
03036 Chromosome and associated proteins [BR:
csum03036
]
138075249 (SF3B1)
Spliceosome [BR:
csum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
138075249 (SF3B1)
Complex B
138075249 (SF3B1)
Complex C
U2 SnRNP specific factors
138075249 (SF3B1)
Chromosome and associated proteins [BR:
csum03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
138075249 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
138075249
NCBI-ProteinID:
XP_068822966
LinkDB
All DBs
Position
3:complement(130414886..130452207)
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKNVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacgggttattatgac
caggaaatttacggtggaagtgacagcaggtttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaacgatataccacagtcaacagaacag
tatgatccatttgctgagcatcgacctccgaagattgcagatcgggaagatgaatacaaa
aagcacaggcggaccatgataatttcccctgagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttaactaaagaagagagagaaattaggcaacagctagcagaaaaagctaaggctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacggaaacgacgttgg
gatcaaacagctgatcagactcctggtgccactccaaaaaagctatcaagttgggatcaa
gcagagacccctggacataccccttccttaagatgggatgaaacaccaggtcgtgcaaag
ggaagtgaaactcctggagcaaccccaggttcaaaaatatgggatcctacccctagtcac
acacctgcgggagctgctactcctggacgaggcgatacaccaggccacgcaacaccaggc
catggaggtgcaacttccagtgctcggaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gattccattggtgaaacgccaactcccggagccagtaaaagaaagtcacgttgggatgaa
acaccagctagtcagatgggtggaagcactcctgttctgacccctggaaagacaccaatt
ggcacaccagccatgaacatggccacccctactccaggtcacataatgagtatgactcct
gagcagcttcaggcttggcgatgggagcgagaaattgatgagagaaatcgcccattgtct
gatgaagaattagatgctatgttcccagaaggatataaggtacttccccctccagctgga
tatgttcctattcgaactccagctcgaaagctgacagcaactccaacacctttgggtggt
atgacaggtttccacatgcaaacagaagatagaactatgaaaaacgttaatgaccaacca
tctggaaatcttccatttttaaaacctgatgatattcagtactttgataaacttttggtt
gatgtcgatgaatcaactcttagtccagaagagcaaaaagagagaaaaataatgaagttg
cttttaaaaattaagaatggaacacctcctatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttcctctgctgatg
tcacctacacttgaggatcaagagcgtcatttacttgtgaaagttattgatagaatatta
tacaaacttgatgacttagttcgaccatatgtacacaagatcctagtggtcattgaacca
ttgttgattgatgaagattactacgctcgagtggaaggcagagagattatttctaatttg
gcaaaggctgctggactggctactatgatctctaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacaacagctagagcttttgctgttgtagcttctgctctgggc
attccttcgttattgcctttcttaaaagctgtgtgcaaaagcaagaagtcctggcaagcg
agacacactggtataaagattgtacagcagatagctattctcatgggctgtgccatcttg
ccacatctcagaagtttagttgaaatcattgagcatggtcttgtggatgagcagcaaaaa
gttcggaccattagtgctttggccattgctgccctggctgaagcagcaaccccttatggt
atcgaatctttcgattctgtattaaagcctctatggaagggtatccgccaacacagagga
aagggtcttgccgctttcttaaaggctattgggtatcttattcctctcatggatgcagaa
tatgccaactactatactagagaagtgatgttaattcttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgtgctaaaggtggtaaagcagtgttgtggaacagatggt
gtagaagcaaactacattaaaacagagatccttcctcccttttttaaacacttttggcaa
catagaatggctttggatagaagaaattaccgacagttagttgatactactgtggagttg
gcaaacaaagtaggtgcagcagaaattatatccaggattgtggatgatctaaaagatgaa
gctgaacagtacagaaaaatggttatggagacaattgagaaaatcatgggcaacttggga
gcagcagatattgatcataaacttgaagaacaactgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaacggctttggtacagtggtcaatgct
cttggcaaacgagtcaaaccttacttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatcagcaaaagttaggcagcaggcagctgacttaatctctcgaacagctgtt
gtcatgaagacttgtcaagaggaaaaattgatggggcatttgggtgttgttttgtatgag
tatttgggtgaagagtaccctgaagttttgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctgctgcctagactc
acccccatcttaaagaataggcatgaaaaagtacaggagaattgtattgatcttgttggg
cgtattgctgataggggagctgaatatgtgtctgcaagagaatggatgaggatttgcttt
gagcttttagagctcttaaaagcacacaaaaaagctattcgtagagccacagtcaacaca
tttggttatattgcaaaggccattggccctcatgatgtattggctacacttctcaacaac
ctaaaagttcaggaaaggcagaacagagtttgtacaactgtggccatagctattgtcgct
gaaacatgttcacccttcacagtactacctgccttaatgaatgaatacagagttcctgaa
ctgaatgttcaaaatggagtgttaaagtcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatttatgctgtaacaccactacttgaggatgctttaatggatagg
gaccttgtacacagacagactgctagtgcagtggtgcaacacatgtcacttggggtttat
ggatttggttgcgaagattcgctgaatcacttgttgaactatgtatggcccaatgtattc
gagacatctccccatgtaattcaggcagttatgggggccctggagggtctcagagttgct
attggaccatgtagaatgctacagtattgtttacagggtttgtttcacccagcccggaaa
gtcagagatgtgtattggaaaatttacaactccatctacatcggttcacaggatgctctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
