Capricornis sumatraensis (Sumatran serow): 138083374
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Entry
138083374 CDS
T10522
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
csum Capricornis sumatraensis (Sumatran serow)
Pathway
csum04151
PI3K-Akt signaling pathway
csum04510
Focal adhesion
csum04512
ECM-receptor interaction
csum04518
Integrin signaling
csum04611
Platelet activation
csum04820
Cytoskeleton in muscle cells
csum04926
Relaxin signaling pathway
csum04933
AGE-RAGE signaling pathway in diabetic complications
csum04974
Protein digestion and absorption
csum05146
Amoebiasis
csum05165
Human papillomavirus infection
csum05205
Proteoglycans in cancer
csum05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
csum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
138083374 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138083374 (COL1A1)
04518 Integrin signaling
138083374 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138083374 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138083374 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
138083374 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
138083374 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
138083374 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
138083374 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
138083374 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
138083374 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
138083374 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
138083374 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csum00536
]
138083374 (COL1A1)
Glycosaminoglycan binding proteins [BR:
csum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138083374 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
138083374
NCBI-ProteinID:
XP_068833325
LinkDB
All DBs
Position
8:86632047..86649918
Genome browser
AA seq
1463 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQEEDIPPVTCVQNGLRYHDRDVWKPVPCQI
CVCDNGNVLCDDVICDELKDCPNAKVPTDECCPVCPEGQESTTDQETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGISVPGPM
GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR
GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLP
GPPGERGGPGSRGFPGSDGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ
GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK
GETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP
GPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA
GKEGSKGPRGETGPAGRAGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE
GSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV
GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGTPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSAGYDLSFL
PQPPQEKAHDGGRYYRADDASVVRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRD
LKMCHPDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDK
RHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQT
GNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIID
VAPLDVGAPDQEFGFDIGSVCFL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggagggccaggaagaaggccaagaagaagacatcccaccagtcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccctgccagatc
tgtgtctgcgacaacggcaacgtgctgtgcgatgacgtgatctgcgacgaacttaaggac
tgtcctaacgccaaagtccccacggacgaatgctgccccgtctgccccgaaggccaggaa
tcaaccacggaccaagaaaccactggagtcgagggacccaaaggagacactggcccccga
ggcccaaggggacccgccggcccccctggccgagatggcatccctggacaacctggactt
cccggaccccctggaccccccggacctcccggaccccctggcctcggaggaaactttgct
ccccagttgtcttacggctatgatgagaaatcaacaggaatttccgtgcctggtcccatg
ggtccttctggtcctcgtggtctccctggcccccctggcgcacctggtccccaaggtttc
caaggcccccctggtgagcctggcgagcccggagcctcaggtcccatgggtccccgtggt
ccccctggcccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtcct
ggtgagcgcgggcctcctggacctcagggtgctcggggattgcctggaacagctggcctc
cctggaatgaagggacacagaggtttcagtggtttggatggtgccaagggagatgctggt
cctgctggccccaagggtgagcctggtagccctggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgct
cgaggaaatgatggtgctactggtgctgctggcccccctggtcccactggccccgctggt
cctcctggtttccctggtgctgtgggtgctaagggtgaagctggtccccaaggaccccga
ggttctgaaggtccccagggtgtacgtggtgagcctggcccccctggccctgctggtgct
gctggccctgctggcaaccctggtgctgatggacagcctggtgctaaaggtgccaatggc
gctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctctggaccccag
ggccccagtggcccccctggtcccaagggtaacagcggtgaacccggtgctcctggcagc
aaaggagacactggcgccaagggagaacccggtcccactggtattcaaggcccccctggc
cccgctggggaagaaggaaagcgaggagcccgaggtgaacctggacctgctggcctgcct
ggaccccctggcgagcgtggcggacctggaagccgtggtttccctggctccgacggtgtt
gctggtcccaagggtcctgctggtgaacgcggtgctcctggccctgctggccccaaaggg
tctcctggtgaagctggtcgccccggtgaagctggtctgcccggtgccaagggtctgact
ggaagccctggcagcccgggtcctgatggcaaaactggcccccctggtcccgccggtcaa
gatggccgccctggacccccaggccctcccggtgcccgtggtcaggctggcgtgatgggt
ttccctggacctaaaggtgctgctggagagcctggaaaagctggagagcgaggtgttcct
ggaccccctggcgctgttggtcctgctggcaaagacggagaagctggagctcagggaccc
ccaggacctgctggccccgctggtgagagaggcgaacaaggccctgctggctcccctgga
ttccagggtctccccggccctgctggtcctcctggtgaagcaggcaaacctggtgaacag
ggtgttcctggagaccttggtgcccccggcccctctggagcaagaggcgagagaggtttc
cccggcgagcgtggtgtgcaagggccgcccggtcctgcaggtccccgtggagccaatggt
gcccctggcaacgatggtgctaagggtgatgctggtgcccctggagcccccggtagccag
ggtgcccctggccttcaaggaatgcctggtgaacgaggtgcagctggccttccaggccct
aagggtgacagaggggatgctggtcccaaaggtgctgatggtgctcctggcaaagatggc
gtccgtggtctgactggtcccatcggtcctcctggccccgctggtgcccctggtgacaag
ggtgaaactggtcctagcggcccagccggtcccactggagctcgtggcgcccccggtgac
cgtggtgagcctggtccccccggccctgctggcttcgctggcccccctggtgctgatggc
caacctggtgctaaaggcgaacctggtgatgctggtgctaaaggtgacgctgggcccccc
gggcctgctggacctgctggaccccctggccccattggtaacgttggtgctcctggaccc
aaaggtgctcgcggcagcgctggtccccctggtgctactggtttcccaggtgctgctggc
cgagtcggtccccccggcccctctggaaatgctggaccccctggccctcctggccctgct
ggcaaagaaggcagcaaaggcccccgtggtgagactggccccgctgggcgtgccggtgaa
gtcggtccccctggtccccctggccccgctggtgagaaaggagcccctggtgctgacgga
cctgctggcgctcctggcactcctggacctcagggtattgctggacagcgtggtgtggtc
ggcctgcccggtcagagaggagaaagaggcttccctggtcttcctggaccctctggtgaa
cccggcaaacaaggtccttctggagcaagtggtgaacgtggcccccctggtcccatgggc
ccccctggattggctggaccccctggcgagtctggacgtgagggagctcctggtgctgaa
ggatcccctggacgagatggtgctcctggcgccaagggtgaccgtggtgagaccggccct
gctggacctcctggtgctcctggtgctcccggtgcccctggccctgtcgggcctgctggc
aagagtggtgatcgtggtgagactggtcctgctggtcctgctggtcccgttggccccgtt
ggtgcccgtggccccgctggaccccaaggcccccgtggtgacaagggtgagacaggcgaa
cagggcgacagaggcattaagggtcaccgtggcttctccggtctccagggtccccctggc
cctcccggctctcctggtgagcaaggtccttctggagcctctggtcctgctggtccccgc
ggtccccctggctctgctggtactcctggcaaagacggactcaatggtctcccaggcccc
atcggtccccctgggcctcgaggtcgcactggtgatgctggtcctgctggtcctcccggc
cctcctggaccccctggtccccctggtcctcccagcgctggctacgacttgagcttcctg
ccccagccacctcaagagaaggctcacgatggtggccgctactaccgggctgatgatgcc
agtgtggtccgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcag
atcgagaacatccggagccctgaaggcacccgcaagaaccccgcccgcacctgccgtgac
ctcaagatgtgccaccccgactggaagagcggagaatactggattgaccccaaccaaggc
tgcaacctggacgccattaaggtcttctgcaacatggagactggtgagacctgtgtgtac
cccactcagcccagcgtggcccagaagaactggtacatcagcaagaaccccaaggacaag
aggcacgtctggtacggcgagagcatgaccggcggattccagttcgagtacggcggccag
ggctccgatcctgccgatgtggccatccagctgactttcctgcgcctgatgtccaccgag
gcctcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcagacc
ggcaacctcaagaaggccctgctcctccagggctccaacgagatcgagatccgggccgag
ggcaacagccgcttcacctacagcgtcacctacgatggctgcacgagtcacaccggagcc
tggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgat
gtggctcccttggacgttggcgccccagaccaggaattcggcttcgacatcggctctgtc
tgcttcctgtaa
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