KEGG   Cucumis sativus (cucumber): 101205556
Entry
101205556         CDS       T02486                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03018  RNA degradation
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101205556
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101205556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101205556
   03041 Spliceosome [BR:csv03041]
    101205556
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101205556
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101205556
Spliceosome [BR:csv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101205556
 Complex C
  U2 snRNP components
    101205556
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF150_C DUF1256
Other DBs
NCBI-GeneID: 101205556
NCBI-ProteinID: XP_004135926
UniProt: A0A0A0K9T1
LinkDB
Position
7:complement(19712438..19714566)
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgtttttctcgtacttcaaggatttggtgggcagagaggtgacagttgagttgaag
aacgacctagcaattagaggaactctgcattctgtagatcagtatctcaacatcaaactg
gaaaacaccagggttgttgatcaggaaaaataccctcatatgctttctgtgagaaactgt
ttcatcaggggatcagtggtgagatatgttcaacttccaccagatggtgttgatgtcgag
ttgttgcatgatgccaccagacgcgaggctcgaggtggctaa

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